View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_high_3 (Length: 730)
Name: NF17924_high_3
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 675; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 16 - 719
Target Start/End: Original strand, 37663501 - 37664204
Alignment:
| Q |
16 |
caaatggaatgttcgatattgaaagcttgtcaatatcgctaaatgtcagacccttggctgctggtgcttccaaagtttttccagtccagttaataggaac |
115 |
Q |
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| T |
37663501 |
caaatggaatgttcgatattgaaagcttgtcaatatcgctaaatgtcagacccttggctgctggtgcttccaaagtttttccagtccagttaatgggaac |
37663600 |
T |
|
| Q |
116 |
caaaaccataaaagccagtagggtagttggggcaaatattttgacgctgtacatgagtattcccatcagaaaaacaaaataactaaatattagaaaacag |
215 |
Q |
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| T |
37663601 |
caaaaccataaaagccagtagggtagttggggcaaatattttgacactgtacatgagtattcccatcagaaaaacaaaataactaaatattagaaaacag |
37663700 |
T |
|
| Q |
216 |
aaagttttcaaactgcagttgcgaacactcaaatcttgacaataatttaagccattaaatggaaactgggtgcacgttaactaacccaagaatataaata |
315 |
Q |
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| T |
37663701 |
aaagttttcaaactgcagttgcgaacactcaaatcttgacaataatttaagccattaaatggaaactgggtgcacgttaactaacccaagaatataaata |
37663800 |
T |
|
| Q |
316 |
cgaataaagacggcagagtcaaggcctgcatgatcaataagctcaggttcaggcatatgcaatgctgcaggcatccaattgaggaacctaatgtaggttc |
415 |
Q |
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| T |
37663801 |
cgaataaagacggcagagtcaaggcctgcatgatcaataagctcaggttcaggcatatgcaatgctgcaggcatccaattgaggaacctaatgtaggttc |
37663900 |
T |
|
| Q |
416 |
caaagtcaaggttaacaaatttcttgacaattgatctggaatttgttgggctgcttcttatccccttcagataccattttgggaagtaaaccctatcatt |
515 |
Q |
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| T |
37663901 |
caaagtcaaggttaacaaatttcttgacaattgatctggaatttgttgggctgcttcttatccccttcagataccattttgggaagtaaaccctatcatt |
37664000 |
T |
|
| Q |
516 |
gaaaggctgaagtcgcaacactgcaaacgctaaaaggaacatagttgcggaaaacagattgatgccagcagaaacgccaatatcgactagagttgccatt |
615 |
Q |
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| T |
37664001 |
gaaaggctgaagtcgcaacactgcaaacgctaaaaggaacatagttgcggaaaacagattgatgccagcagaaacgccaatatcgactagagttgccatt |
37664100 |
T |
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| Q |
616 |
ttcttctccctttaaaacacactttaacctacacatatttnnnnnnntaagtcatgaaattggctttccgatttcaagtagcatgacttctaaattcatt |
715 |
Q |
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| T |
37664101 |
ttcttctccctttaaaacacactttaacctacacatatttaaaaaaataagtcatgaaattggctttccgatttcaagtagcatgacttctaaattcatt |
37664200 |
T |
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| Q |
716 |
tcag |
719 |
Q |
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|||| |
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| T |
37664201 |
tcag |
37664204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 478 - 527
Target Start/End: Original strand, 55427917 - 55427966
Alignment:
| Q |
478 |
cccttcagataccattttgggaagtaaaccctatcattgaaaggctgaag |
527 |
Q |
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| T |
55427917 |
cccttgagataccattttgggaagtataccctatcattcaaaggctgaag |
55427966 |
T |
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