View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17924_high_34 (Length: 204)

Name: NF17924_high_34
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17924_high_34
NF17924_high_34
[»] chr8 (2 HSPs)
chr8 (100-187)||(27459876-27459963)
chr8 (105-176)||(6400798-6400869)
[»] chr7 (1 HSPs)
chr7 (103-176)||(2377162-2377235)
[»] chr3 (4 HSPs)
chr3 (126-175)||(22754828-22754877)
chr3 (103-176)||(39926355-39926428)
chr3 (103-177)||(44798654-44798728)
chr3 (100-176)||(15042958-15043034)
[»] chr5 (4 HSPs)
chr5 (138-176)||(3040152-3040190)
chr5 (135-176)||(16100774-16100815)
chr5 (149-177)||(11125950-11125978)
chr5 (106-174)||(17066880-17066948)
[»] chr4 (2 HSPs)
chr4 (106-176)||(26184125-26184195)
chr4 (138-179)||(21474759-21474800)
[»] chr1 (2 HSPs)
chr1 (103-176)||(41515212-41515285)
chr1 (109-177)||(5270130-5270198)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 27459876 - 27459963
Alignment:
Q  100 ccagcgtgagttaactcaaacatgggtattttgggaaattcagctggaagcgagcaaaatgtgttgggagaagagcaattatcatata 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27459876 ccagcgtgagttaactcaaacatgggtattttgggaaattcagctggaagcgagcaaaatgtgttgggagaagaacaattatcatata 27459963  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 6400798 - 6400869
Alignment:
Q  105 gtgagttaactcaaacatgggtattttgggaaattcagctggaagcgagcaaaatgtgttgggagaagagca 176  Q
    |||||||||||||  || ||| ||||| |||| ||||| |||||||||||||| | | ||||||||||||||    
T  6400798 gtgagttaactcacgcaggggcattttcggaagttcagatggaagcgagcaaatttttttgggagaagagca 6400869  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 2377235 - 2377162
Alignment:
Q  103 gcgtgagttaactcaaacatgggtattttgggaaattcagctggaagcgagcaaaatgtgttgggagaagagca 176  Q
    |||||||||||||||  || |||||||||||||| ||  | | ||||||||||||||||| |||||||||||||    
T  2377235 gcgtgagttaactcacgcaggggtattttgggaagtttggtttgaagcgagcaaaatgtgatgggagaagagca 2377162  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 22754828 - 22754877
Alignment:
Q  126 tattttgggaaattcagctggaagcgagcaaaatgtgttgggagaagagc 175  Q
    ||||||||||| ||||| || | |||||||||||||||||||||||||||    
T  22754828 tattttgggaagttcagttgaacgcgagcaaaatgtgttgggagaagagc 22754877  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 39926428 - 39926355
Alignment:
Q  103 gcgtgagttaactcaaacatgggtattttgggaaattcagctggaagcgagcaaaatgtgttgggagaagagca 176  Q
    |||||| |||||||| |||  | ||||||| ||| ||||| | || ||||||||||||||||||||||||||||    
T  39926428 gcgtgaattaactcacacagagatattttgagaagttcagtttgacgcgagcaaaatgtgttgggagaagagca 39926355  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 44798728 - 44798654
Alignment:
Q  103 gcgtgagttaactcaaacatgggtattttgggaaattcagctggaagcgagcaaaatgtgttgggagaagagcaa 177  Q
    |||||||||||||||   |  |||||||| |||| ||||| | |  |||||||||||||||||||||||||||||    
T  44798728 gcgtgagttaactcacttagcggtattttaggaagttcagttaggcgcgagcaaaatgtgttgggagaagagcaa 44798654  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 15042958 - 15043034
Alignment:
Q  100 ccagcgtgagttaactcaaacatgggtattttgggaaattcagctggaagcgagcaaaatgtgttgggagaagagca 176  Q
    ||||||| ||||||||||  || ||||||||| |||| ||  | ||||| ||| ||||||||| |||||||||||||    
T  15042958 ccagcgtaagttaactcacgcaggggtattttaggaagtttggttggaaacgaacaaaatgtgatgggagaagagca 15043034  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 3040152 - 3040190
Alignment:
Q  138 ttcagctggaagcgagcaaaatgtgttgggagaagagca 176  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  3040152 ttcagttggaggcgagcaaaatgtgttgggagaagagca 3040190  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 16100815 - 16100774
Alignment:
Q  135 aaattcagctggaagcgagcaaaatgtgttgggagaagagca 176  Q
    ||||| ||||||| |||||||||||||||||| |||||||||    
T  16100815 aaatttagctggacgcgagcaaaatgtgttggaagaagagca 16100774  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 11125950 - 11125978
Alignment:
Q  149 gcgagcaaaatgtgttgggagaagagcaa 177  Q
    |||||||||||||||||||||||||||||    
T  11125950 gcgagcaaaatgtgttgggagaagagcaa 11125978  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 17066880 - 17066948
Alignment:
Q  106 tgagttaactcaaacatgggtattttgggaaattcagctggaagcgagcaaaatgtgttgggagaagag 174  Q
    ||||||||||||  || ||||||||| | || ||||| |||| |||||| |||||||||| ||||||||    
T  17066880 tgagttaactcacgcaggggtattttagaaagttcagttggatgcgagcgaaatgtgttgcgagaagag 17066948  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 26184195 - 26184125
Alignment:
Q  106 tgagttaactcaaacatgggtattttgggaaattcagctggaagcgagcaaaatgtgttgggagaagagca 176  Q
    |||||||||||| ||||||| ||| |||||||||||  ||| | ||||||||||  |||||| ||||||||    
T  26184195 tgagttaactcacacatgggcattatgggaaattcacttgggaacgagcaaaatcagttgggggaagagca 26184125  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 21474800 - 21474759
Alignment:
Q  138 ttcagctggaagcgagcaaaatgtgttgggagaagagcaatt 179  Q
    ||||| ||||||||||||||||||| |||||||||| |||||    
T  21474800 ttcagttggaagcgagcaaaatgtgatgggagaagatcaatt 21474759  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 41515212 - 41515285
Alignment:
Q  103 gcgtgagttaactcaaacatgggtattttgggaaattcagctggaagcgagcaaaatgtgttgggagaagagca 176  Q
    |||||||||||||||  || ||||||||||| || ||  | ||| ||||||||||||||| ||| |||||||||    
T  41515212 gcgtgagttaactcacgcacgggtattttggaaagtttggttgggagcgagcaaaatgtgatggaagaagagca 41515285  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 5270130 - 5270198
Alignment:
Q  109 gttaactcaaacatgggtattttgggaaattcagctggaagcgagcaaaatgtgttgggagaagagcaa 177  Q
    |||||||||| || ||||||||| |||| ||||| |||||  || ||||||||||||||  ||||||||    
T  5270130 gttaactcaatcaggggtatttttggaatttcagttggaaatgaacaaaatgtgttgggtaaagagcaa 5270198  T

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