View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_high_6 (Length: 550)
Name: NF17924_high_6
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 41056560 - 41056155
Alignment:
| Q |
17 |
cacttttggactcaattctagcagctctaatcacgaaccttgtttggtacgagtactttcttctagtattgagtttgagatgaaaactcggtttggaaac |
116 |
Q |
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| T |
41056560 |
cacttttggactcaattctagcagctctaatcacgaaccttgtttggtacgagtactttcttctagtattgagtttgagatgaaaactcggtttggaaac |
41056461 |
T |
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| Q |
117 |
agagcatgattgggagagtgagagtgagaatccagaagaggcagtagaagataactgaacaaatggtgaccaaacagaagtcactctcaggcttagtgcc |
216 |
Q |
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| T |
41056460 |
agagcatgattgggagagtgagagtgagaatccagaagaggcagtagaagataactgaacaaatggtgaccaaacagaagtcactctcaggcttagtgcc |
41056361 |
T |
|
| Q |
217 |
ataatgggttggaatggttaatccaataatattcacctccacctcaattttccagcatcatcttcttcgttagtcttattctgtttttctgctccaaaat |
316 |
Q |
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| T |
41056360 |
ataatgggttggaatggttaatccaataatattcacctccacctcaattttccagcatcatcttcttcgttagtcttattctgtttttctgctccaaaat |
41056261 |
T |
|
| Q |
317 |
tacatttttagtcatttacctattattttgcactatttacatgtggattttaagtttcatatttaacatttatatgcaaatatagatgaaagtttgagag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41056260 |
tacatttttagtcatttacctattattttgcactatttacatgtggattttaagtttcatatttaacatttatatgcaaatatagatgaaagtttgagag |
41056161 |
T |
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| Q |
417 |
accata |
422 |
Q |
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|||||| |
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| T |
41056160 |
accata |
41056155 |
T |
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