View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_low_11 (Length: 451)
Name: NF17924_low_11
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 20 - 441
Target Start/End: Original strand, 43578190 - 43578611
Alignment:
| Q |
20 |
cgaggtcgttttcctctctctttgttttctttctttaacgaaatgctgcgtggaaccgtttcaatggccaaacgcacccctcttttttctattctcaccc |
119 |
Q |
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| T |
43578190 |
cgaggtcgttttcctctctctttgttttctttctttaacgaaatgctgcgtggaaccgtttcaatggccaaacgcacccctcttttttctattctcaccc |
43578289 |
T |
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| Q |
120 |
atcgcccatttctatcttctttctctctcaaacacactttcaaccgtgccactcttcccttcactaccaccaccatcaacaacactttatctcaaacacc |
219 |
Q |
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| T |
43578290 |
atcgcccatttctatcttctttctctctcaaacacactttcaaccgtgccactcttcccttcactaccaccaccatcaacaacactttatctcaaacacc |
43578389 |
T |
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| Q |
220 |
cacttcccaaaacaacactgaatcaaccactcaccccatcaagctttcaaccaaagccagaagaaaagctgctcaagaatcccccgttggaattttacnn |
319 |
Q |
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| T |
43578390 |
cacttcccaaaacaacactgaatcaaccactcaccccatcaagctttcaaccaaagccagaagaaaagctgctcaagaatcccccgttggaattttacaa |
43578489 |
T |
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| Q |
320 |
nnnnnnctcaacaactgttctaaaaccagtgatgttctacaagcactaaacctctacgacgaagcgcgaaaagcgcatgttcccctcaatcttgatcatt |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43578490 |
aaaaaactcaacaactgttctaaaaccagtgatgttctacaagcactaaacctctacgatgaagcgcgaaaagcgcatgttcccctcaatcttgatcatt |
43578589 |
T |
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| Q |
420 |
ataataaactcttgtacctatg |
441 |
Q |
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| T |
43578590 |
ataataaactcttgtacctatg |
43578611 |
T |
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