View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_low_12 (Length: 445)
Name: NF17924_low_12
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 44628141 - 44627707
Alignment:
| Q |
1 |
caagaagagatcatcctacaagcaaaaatcatatcatatattatataaaccatagatgaaatagtaatttaaaatttaataggaaacagaacaatgtaaa |
100 |
Q |
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| T |
44628141 |
caagaagagatcatcctacaagcaaaaatcatatcatatattatataaaccatagatgaaatagtaatttaaaatttaataggaaacagaacaatgtaca |
44628042 |
T |
|
| Q |
101 |
attttttacaacttcaaagtaaacatattcaatagttagtaactcgatcatttacattttaaagtttgattaataaactaaatccaacatagctacttag |
200 |
Q |
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| T |
44628041 |
aaattttacaacttcaaagtaaacatattcaatagttagtaactcaatcatttacattttaaagtttgattaataaactcaatccaacatagctacttag |
44627942 |
T |
|
| Q |
201 |
taaacaacaaatacaatgacatgatgaattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44627941 |
taaacaacaaatacaatgacatgatgaattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaa |
44627842 |
T |
|
| Q |
301 |
gagtagtttttgaatcagggcattgcacgtgtagaagaggatcctctcttctggcgttccttctctccttgcttgaaggacttcttgtttttctttagaa |
400 |
Q |
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| T |
44627841 |
gagtagtttttgaatcagggcgttgcacgtgtagaagaggatcctctcttccggcgctccttctctccttgcttgaaggacttcttgtttttctttagaa |
44627742 |
T |
|
| Q |
401 |
gcttgaaaagatctttgataaccaagttcttctct |
435 |
Q |
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| T |
44627741 |
gcttgaaaagatctttgataaccaagttcatctct |
44627707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 308 - 429
Target Start/End: Complemental strand, 26080955 - 26080834
Alignment:
| Q |
308 |
ttttgaatcagggcattgcacgtgtagaagaggatcctctcttctggcgttccttctctccttgcttgaaggacttcttgtttttctttagaagcttgaa |
407 |
Q |
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||||||||||| ||||| ||| ||||||||||||||| ||| | | |||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26080955 |
ttttgaatcagaacattgtacgcgtagaagaggatcctttctccctgtgttctttctctccttgcttgaaggacttcttgtttttctttagaagcttgga |
26080856 |
T |
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| Q |
408 |
aagatctttgataaccaagttc |
429 |
Q |
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||| ||||| | |||||||||| |
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| T |
26080855 |
aaggtctttcaaaaccaagttc |
26080834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 2850786 - 2850876
Alignment:
| Q |
227 |
aattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatca |
317 |
Q |
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| T |
2850786 |
aattttcattttctcttcaagtgcctgtgtgtgaagtttcagctgtagaacaagttagaaaaaacacttacaaggagtactttttgaatca |
2850876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 2902818 - 2902908
Alignment:
| Q |
227 |
aattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatca |
317 |
Q |
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||||||||||| |||||||| | ||| ||||||||||||| |||||||||||||| |||| ||||||||| ||||| ||||||||||| |
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| T |
2902818 |
aattttcattttctcttcaagtgcctgtgtgtgaagtttcagctgtagaacaagttagaaaaaacacttacaaggagtactttttgaatca |
2902908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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