View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_low_15 (Length: 403)
Name: NF17924_low_15
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 150 - 387
Target Start/End: Complemental strand, 47806242 - 47806005
Alignment:
| Q |
150 |
cgatttagtttgaaatttcatttgattcatttgacataggaacctgtttgaggaagacaatggtttccacctgggggcagtaattccttagcaacaacta |
249 |
Q |
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| T |
47806242 |
cgatttagtttgaaatttcatttgattcatttgacataggaacctgtttgaggaagacaatggtttccacctgggggcagtaattccttagcaacaacta |
47806143 |
T |
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| Q |
250 |
atttgactgaggtaatttgcagcaattcacacgtgcagttaatgcatatgttatatacaactatttaagcagaattacaatgctatcatgaagcaataat |
349 |
Q |
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| T |
47806142 |
atttgactgaggtaatttgcagcaattcacacgtgcagttaatgcatatgttatatacaactatttaagcagaattacaatgctatcatgaagcaataat |
47806043 |
T |
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| Q |
350 |
aaacaacggataccgtgtttataattcaaggacacaag |
387 |
Q |
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| T |
47806042 |
aaacaacggataccgtgtttataattcaaggacacaag |
47806005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 47806364 - 47806275
Alignment:
| Q |
15 |
cagagaataaggttacaaggaaagatcaaactcaagtaagattgaatatccaaagaatcatcaatctgtataccaccaatggtgattctc |
104 |
Q |
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| T |
47806364 |
cagagaataaggttacaaggaaagatcaaactcaagtaagattgaatatccaaagaatcatcaatctgtataccaccaatggtgattctc |
47806275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 52228184 - 52228128
Alignment:
| Q |
14 |
gcagagaataaggttacaaggaaagatcaaactcaagtaagattgaatatccaaaga |
70 |
Q |
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| T |
52228184 |
gcagagaaaaaggttacaaggaaagactaaactcatgtaagattgaatatcctaaga |
52228128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 150 - 325
Target Start/End: Original strand, 29346586 - 29346761
Alignment:
| Q |
150 |
cgatttagtttgaaatttcatttgattcatttgacataggaacctgtttgaggaagacaatggtttccacctgggggcagtaattccttagcaacaacta |
249 |
Q |
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| T |
29346586 |
cgatttagtttgaaatttcatttgatttatttgacacatgaacttgtttgaggaagacaatggattccacctgggggcagtaattccttagaaacagata |
29346685 |
T |
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| Q |
250 |
atttgactgaggtaatttgcagcaattcacacgtgcagttaatgcatatgttatatacaactatttaagcagaatt |
325 |
Q |
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| T |
29346686 |
atttaactgatgtaatttgtagcaattcactcacgcagttaatgcatatgttatatacaactatttaagcagaatt |
29346761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 29346513 - 29346565
Alignment:
| Q |
52 |
aagattgaatatccaaagaatcatcaatctgtataccaccaatggtgattctc |
104 |
Q |
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| T |
29346513 |
aagattgaatatccaaagaataatcaagctgaatacacccaatggtgattctc |
29346565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 20276930 - 20276855
Alignment:
| Q |
284 |
gcagttaatgcatatgttatatacaactatttaagcagaattacaatgctatcatgaagcaataataaacaacggata |
361 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||| | ||||||| | ||||||||||||||||| |
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| T |
20276930 |
gcagttaatgcatatgttatatacaaatattcaagcagaattacaa--cactcatgaaactataataaacaacggata |
20276855 |
T |
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