View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_low_19 (Length: 354)
Name: NF17924_low_19
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 55054046 - 55053712
Alignment:
| Q |
1 |
aaatttgtatctcagtacagtaataataaattaagaaagaaaaaccagtagcatattgatgaataattaaaagcgcattggcatctttctagtgtactac |
100 |
Q |
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| T |
55054046 |
aaatttgtatctcagtacagtgataataaattaagaaagaaaaaccagtagcatattgatgaataattacaagcgcattggcatctttctagtgtactac |
55053947 |
T |
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| Q |
101 |
taggtaggcagcaaaattgctagaaatacaaacatttacgttatgtagcaccgacacttgatgacacttcacatcaaaggcatgtccggtgtccgaaacg |
200 |
Q |
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| T |
55053946 |
taggtaggcagcaaaattgctagaaatacaaacatttacgttatgtagcaccgacacatgatgacacttcacatcaaaggcatgtccggtgtccgaaacg |
55053847 |
T |
|
| Q |
201 |
ctgacacgacactggcatgtgtagttacattcatataattcattttcttaaattattaccactctcgacgtgtctgtgtttcatagcaattataacattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55053846 |
ctgacacgacactggcatgtgtagttacattcatataattcattttcttaaattattaccactctcgacgtgtctgtgtttcatagcaattataacattc |
55053747 |
T |
|
| Q |
301 |
ggtgaggaaaatgagaggcataacatgaacaacgg |
335 |
Q |
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| T |
55053746 |
ggtgaggaaaatgagaggcataacatgaacaacgg |
55053712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 21768648 - 21768598
Alignment:
| Q |
224 |
gttacattcatataattcattttcttaaattattaccactctcgacgtgtc |
274 |
Q |
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| T |
21768648 |
gttacgttcaaataattcattttctcaaattattaccagtatcgacgtgtc |
21768598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 2517154 - 2517113
Alignment:
| Q |
219 |
gtgtagttacattcatataattcattttcttaaattattacc |
260 |
Q |
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| T |
2517154 |
gtgtagttacattcaattaattcattttctcaaattattacc |
2517113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 39459825 - 39459777
Alignment:
| Q |
225 |
ttacattcatataattcattttcttaaattattaccactctcgacgtgt |
273 |
Q |
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||||||||| |||||||||| ||||||||||||||| | ||||||||| |
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| T |
39459825 |
ttacattcaattaattcatttccttaaattattaccaatgtcgacgtgt |
39459777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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