View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_low_21 (Length: 346)
Name: NF17924_low_21
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 41744125 - 41744452
Alignment:
| Q |
1 |
ttaaaaggacaaccaaaattctaaccttgcatccaatagcctagccttaacatcaataggtttaatactttataatataatcnnnnnnnnnactattctt |
100 |
Q |
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| T |
41744125 |
ttaaaaggacaaccaaaattctaaccttgcatccaatagcctagccttaacatcaataggtttaatactttataatataatctttttttt-actattctt |
41744223 |
T |
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| Q |
101 |
atggcttatcaattcatgtttacttcttgtgcatagtcacataatatggatttaaatgagatagtaatgttattaaatatgaatcaaaatgatgtagtca |
200 |
Q |
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| T |
41744224 |
atggcttatcaattcatgtttacttcttgtgcatagtcacataatatggatttaaatgagatagtcatgttattaaatatggatcaaaatgatgtagtca |
41744323 |
T |
|
| Q |
201 |
tatcgattttagttatcatatgactttgtttttcttttgaaaatcgatctaaactgcaccggaaacatcttgatagtttaatcatttaacacactacaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41744324 |
tatcgattttagttatcatatgactttgtttttcttctgaaaatcgatctaaactgcaccggaaacatcttgatagtttaatcatttgacacactacaaa |
41744423 |
T |
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| Q |
301 |
caaaaagaatatgcccaagattgataagt |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
41744424 |
caaaaagaatatgcccaagattgataagt |
41744452 |
T |
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