View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17924_low_22 (Length: 325)

Name: NF17924_low_22
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17924_low_22
NF17924_low_22
[»] chr4 (3 HSPs)
chr4 (18-313)||(46141908-46142202)
chr4 (175-300)||(34495002-34495127)
chr4 (191-302)||(29011512-29011623)
[»] chr6 (1 HSPs)
chr6 (18-313)||(13105815-13106111)
[»] scaffold0204 (1 HSPs)
scaffold0204 (21-313)||(12233-12516)
[»] chr1 (2 HSPs)
chr1 (27-313)||(51194095-51194374)
chr1 (193-300)||(23473768-23473875)
[»] chr5 (2 HSPs)
chr5 (178-311)||(22473664-22473799)
chr5 (175-232)||(19047603-19047658)
[»] scaffold0006 (1 HSPs)
scaffold0006 (175-300)||(281121-281246)
[»] chr2 (1 HSPs)
chr2 (175-233)||(13016237-13016295)
[»] chr8 (2 HSPs)
chr8 (176-299)||(44605324-44605447)
chr8 (175-302)||(37804173-37804300)
[»] chr3 (2 HSPs)
chr3 (176-299)||(2145225-2145348)
chr3 (229-305)||(22032107-22032184)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 46142202 - 46141908
Alignment:
Q  18 atgcattcggctgggatttttctttctttgaagaagctgggaatcatacaggccaaataaatatcacgaacagggaaatatcattcacgtggtcaataaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  46142202 atgcattcggctgggatttttctttctttgaagaagctgggaatcatacaggccaaataaatatcacgaaaagggaaatagcattcacgtggtcaataaa 46142103  T
Q  118 aaatcatacaaggataaaatagtaaataacttatttattaaatgaagttaatgggtcattccattccataccctccaaattggaggggaagtaaaatgag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  46142102 aaatcatacaaggataaaatagtaaataacttatttattaaatgaagttaatgggtcattccatcccataccctccaaattggaggggaagcaaaatgag 46142003  T
Q  218 agtaagtgatggaatagggtggaatggataccatcaagttccatcccattccattcttttgtttaatatccaaacaatggaatataatgtcattcc 313  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46142002 agtaagtgatggaatacggtggaatgaataccatcaagttccatccc-ttccattcttttgtttaatatccaaacaatggaatataatgtcattcc 46141908  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 300
Target Start/End: Original strand, 34495002 - 34495127
Alignment:
Q  175 attccattccataccctccaaattggaggggaagtaaaatgagagtaagtgatggaatagggtggaatggataccatcaagttccatcccattccattct 274  Q
    |||||||||||| || |||||||||||||| ||| || ||||||||||||||||||||  | ||||||  || ||||  ||||||||  ||| |||| ||    
T  34495002 attccattccattccatccaaattggagggtaagcaatatgagagtaagtgatggaatgtgatggaatacattccattgagttccatttcatcccatcct 34495101  T
Q  275 tttgtttaatatccaaacaatggaat 300  Q
    |||  ||| |||||||||||||||||    
T  34495102 tttaattactatccaaacaatggaat 34495127  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 302
Target Start/End: Complemental strand, 29011623 - 29011512
Alignment:
Q  191 tccaaattggaggggaagtaaaatgagagtaagtgatggaatagggtggaatggataccatcaagttccatcccattccattcttttgtttaatatccaa 290  Q
    ||||||||| |||||||| ||||| |||| |   |||||||| |  | | || ||| |||||| ||||||||||||||||||| ||| ||||| || |||    
T  29011623 tccaaattgaaggggaagaaaaataagaggagaggatggaatggaatagtatagatcccatcatgttccatcccattccattcatttttttaaaattcaa 29011524  T
Q  291 acaatggaatat 302  Q
    ||||||||||||    
T  29011523 acaatggaatat 29011512  T

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Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 13106111 - 13105815
Alignment:
Q  18 atgcattcggctgggatttttctttctttgaagaagctgggaatcatacaggccaaataaatatcacgaacagggaaatatcattcacgtggtcaataaa 117  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  13106111 atgcattaggctaagatttttctttctttgaagaagctgggaatcatacatgccaaataaatatcacgaagagggaaatagcattcacgtggtcaataaa 13106012  T
Q  118 a-aatcatacaaggataaaatagtaaataacttatttattaaatgaagttaatgggtcattccattccataccctccaaattggaggggaagtaaaatga 216  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||    
T  13106011 agaatcatacaaggataaaatactaaataacttatttattaaatgaagttaatgggtcattccatcccataccctccaaattggagtggaagcaaaatga 13105912  T
Q  217 gagtaagtgatggaatagggtggaatggataccatcaagttccatcccattccattcttttgtttaatatccaaacaatggaatataatgtcattcc 313  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13105911 gagtaagtgatggaatagggtgtaatggataccatcaagttccatcccattccattcttttgtttaatatccaaacaatggaatataatgtcattcc 13105815  T

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Target: scaffold0204 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 12233 - 12516
Alignment:
Q  21 cattcggctgggatttttctttctttgaagaagctgggaatcatacaggccaaataaatatcacgaacagggaaatatcattcacgtggtcaataaaaaa 120  Q
    ||||||| ||||||||| | || ||||||| |||||||||||||||| |||||||||||| |||| | | | ||||| |||    ||||   ||||||||    
T  12233 cattcggttgggattttgccttttttgaaggagctgggaatcatacatgccaaataaatagcacggagaagaaaatagcat----gtgg---ataaaaaa 12325  T
Q  121 tcatacaaggataaaatagtaaataacttatttattaaatgaagttaatgggtcattccattccataccctccaaattggaggggaagtaaaatgagagt 220  Q
    | | |  ||||||||||||||||||  ||||| ||| ||| | ||||||   |||||||||  |||||||| |||||||||||||||| || ||||||||    
T  12326 taaaatgaggataaaatagtaaatactttatt-atttaattaggttaatatatcattccatctcatacccttcaaattggaggggaagcaagatgagagt 12424  T
Q  221 aagtgatggaatagggtggaatggataccatcaagttccatcccattccattcttttgtttaatatccaaacaatggaatataatgtcattcc 313  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||| |||| |||||||||||||    
T  12425 aagtgatggaatagggtggaatgga-accatcaagttccatcacattccattctttttttaaatatccaaacaaaggaacataatgtcattcc 12516  T

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Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 27 - 313
Target Start/End: Complemental strand, 51194374 - 51194095
Alignment:
Q  27 gctgggatttttctttctttgaagaagctgggaatcatacaggccaaataaatatcacgaacagggaaatatcattcacgtggtcaataaaaaatcatac 126  Q
    ||||||| |||||||| ||||||| | ||||||||||||| ||||||||||||| |||||| | | ||||| |||    ||||   ||||||||| | |     
T  51194374 gctgggacttttctttttttgaaggaactgggaatcatactggccaaataaatagcacgaagaagaaaatagcat----gtgg---ataaaaaataaaat 51194282  T
Q  127 aaggataaaatagtaaataacttatttattaaatgaagttaatgggtcattccattccataccctccaaattggagggg-aagtaaaatgagagtaagtg 225  Q
     |||| |||||||||||||| || |  ||| ||| | ||||||   ||||||||| |||||||||  |||||||||||| ||| ||||||||||||||||    
T  51194281 gaggacaaaatagtaaataatttgtc-atttaattaggttaatatatcattccatcccataccctttaaattggagggggaagcaaaatgagagtaagtg 51194183  T
Q  226 atggaatagggtggaatggataccatcaagttccatcccattccattcttttgtttaatatccaaacaatggaatataatgtcattcc 313  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||| || |||||||||||||||||| |||||||||||||    
T  51194182 atggaatagggtggaatggataccatcaagttccatcccatttcattatttttttaaatatccaaacaatggaacataatgtcattcc 51194095  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 300
Target Start/End: Complemental strand, 23473875 - 23473768
Alignment:
Q  193 caaattggaggggaagtaaaatgagagtaagtgatggaatagggtggaatggataccatcaagttccatcccattccattcttttgtttaatatccaaac 292  Q
    |||||||||||| | | ||||  ||||||  |||||| || || |||||||||| |||||| ||||||| |||||||||||  || ||  | ||||||||    
T  23473875 caaattggagggaatgaaaaacaagagtagatgatggtatgggatggaatggattccatcatgttccattccattccattcaatttttacacatccaaac 23473776  T
Q  293 aatggaat 300  Q
    ||||||||    
T  23473775 aatggaat 23473768  T

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Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 178 - 311
Target Start/End: Original strand, 22473664 - 22473799
Alignment:
Q  178 ccattccataccctccaaattggaggggaagtaaaatgagagtaagtgatggaatagggtggaatggataccatcaagttccatcccattccattctttt 277  Q
    |||| ||||||| ||  ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  22473664 ccatcccataccttctgaattggaggtgaagcaaaatgagagtaagtgatggaatatggtggaatggataccatcaaattccatctcattccattctttt 22473763  T
Q  278 gtttaatatccaaacaatgga--atataatgtcatt 311  Q
    |||||||||||||||||||||  |||||||||||||    
T  22473764 gtttaatatccaaacaatggaacatataatgtcatt 22473799  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 19047658 - 19047603
Alignment:
Q  175 attccattccataccctccaaattggaggggaagtaaaatgagagtaagtgatggaat 232  Q
    ||||||||||||  |||||||||||||||| ||||||||| |||| ||||||||||||    
T  19047658 attccattccat--cctccaaattggagggtaagtaaaataagagcaagtgatggaat 19047603  T

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Target: scaffold0006 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 300
Target Start/End: Complemental strand, 281246 - 281121
Alignment:
Q  175 attccattccataccctccaaattggaggggaagtaaaatgagagtaagtgatggaatagggtggaatggataccatcaagttccatcccattccattct 274  Q
    |||||||||||| || |||||||||||||| ||| || ||||||||||||||||||||  | ||||||  || ||||  |||||||| ||||  ||||||    
T  281246 attccattccattccatccaaattggagggtaagcaagatgagagtaagtgatggaatgtgatggaatacattccattgagttccattccatctcattct 281147  T
Q  275 tttgtttaatatccaaacaatggaat 300  Q
    |||  ||| |||||||||||| ||||    
T  281146 tttaattactatccaaacaatagaat 281121  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 13016295 - 13016237
Alignment:
Q  175 attccattccataccctccaaattggaggggaagtaaaatgagagtaagtgatggaata 233  Q
    |||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||||    
T  13016295 attccattccattccatccaaattggagggtaagcaaaatgagagtaagtgatggaata 13016237  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 299
Target Start/End: Complemental strand, 44605447 - 44605324
Alignment:
Q  176 ttccattccataccctccaaattggaggggaagtaaaatgagagtaagtgatggaatagggtggaatggataccatcaagttccatcccattccattctt 275  Q
    |||||||||||  |  ||||||||||||||||  ||||||  ||||||| |||||||| | || ||||||||||||   ||||||| ||||||||| |||    
T  44605447 ttccattccatttcacccaaattggaggggaaccaaaatgtaagtaagtaatggaatatgatgaaatggataccattgggttccattccattccatcctt 44605348  T
Q  276 ttgtttaatatccaaacaatggaa 299  Q
    ||  | |  |||||||||||||||    
T  44605347 ttaatgacaatccaaacaatggaa 44605324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 302
Target Start/End: Complemental strand, 37804300 - 37804173
Alignment:
Q  175 attccattccataccctccaaattggaggggaagtaaaatgagagtaagtgatggaatagggtggaatggataccatcaagttccatcccattccattct 274  Q
    ||||||| | |||||  ||||||||||||||||| ||||| |||| |   |||||||| |  ||| || ||| |||||| ||||||| ||||||||| |     
T  37804300 attccatccaatacctcccaaattggaggggaagaaaaataagaggagaggatggaatggaatggtatagatcccatcatgttccattccattccatcca 37804201  T
Q  275 tttgtttaatatccaaacaatggaatat 302  Q
    ||| ||||| ||||||| |||| |||||    
T  37804200 tttttttaaaatccaaataatgaaatat 37804173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 2145225 - 2145348
Alignment:
Q  176 ttccattccataccctccaaattggaggggaagtaaaatgagagtaagtgatggaatagggtggaatggataccatcaagttccatcccattccattctt 275  Q
    ||||||||||| ||  ||||||||||||| |   ||||||  ||||||| |||||||| | ||||||| || |||| | ||||||| ||||||||| |||    
T  2145225 ttccattccattccacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattaggttccattccattccatcctt 2145324  T
Q  276 ttgtttaatatccaaacaatggaa 299  Q
    ||  | |  |||||||||||||||    
T  2145325 ttaatgacaatccaaacaatggaa 2145348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 22032107 - 22032184
Alignment:
Q  229 gaatagggtggaatggataccatcaagttccatcccattccattc-ttttgtttaatatccaaacaatggaatataat 305  Q
    ||||||| |||||| ||||||||||| ||||| |||||| | ||| |||| ||||||||| ||| ||||||| |||||    
T  22032107 gaataggatggaatagataccatcaaattccaacccattgcgttctttttttttaatatcgaaataatggaacataat 22032184  T

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