View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_low_24 (Length: 303)
Name: NF17924_low_24
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 51457798 - 51457633
Alignment:
| Q |
14 |
aggggcattagcaggagggtgatgatgatggtggtgatgggctggaggttta---gtagggtgagggtgtacaggagtgtgaacattggtagctagggca |
110 |
Q |
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| T |
51457798 |
aggggcatgagcaggagggtgatgatgatggtggtgatgggctggaggtttataagtagggtgagggtgtacaggagtgtgaacattggtag---gggca |
51457702 |
T |
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| Q |
111 |
gatgatgatgagtgatagtagtgaggggtgtttgcccttgggtgaaccgatgatttagttggtggatga |
179 |
Q |
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| T |
51457701 |
gatgatgatgagtgatagtggtgaggggtgtttgcccttgggtgaaccgatgatttagttggtggatga |
51457633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 51457572 - 51457459
Alignment:
| Q |
177 |
tgaggagtgtttgccggtgggtgaagtggtgctggtgcgtgaggagggtaagcggggtgaccagaataaagctcttgagcaaatgcaatgaaa---gagg |
273 |
Q |
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| T |
51457572 |
tgaggagcgtttgccggtgggtgaagtggtgctggtgcgtgaggagggtaagcggggtgaccagaataaagctcttgagcaaatgcaatgaaagaggagg |
51457473 |
T |
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| Q |
274 |
ttagttgaagtaag |
287 |
Q |
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| T |
51457472 |
ttagttgaagtaag |
51457459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 56089226 - 56089182
Alignment:
| Q |
239 |
agaataaagctcttgagcaaatgcaatgaaagaggttagttgaag |
283 |
Q |
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| T |
56089226 |
agaattaagctcttcagcaaatgcaatgagaaaggttagttgaag |
56089182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 3175886 - 3175973
Alignment:
| Q |
12 |
ataggggcattagcaggagggtgatgatgatggtggtgatgggctggaggtttagtagggt---gagggtgtacaggagtgtgaacat |
96 |
Q |
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| T |
3175886 |
ataggggcatgagcaggagagtgatgatgatgatgatgatgggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacat |
3175973 |
T |
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