View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17924_low_25 (Length: 277)
Name: NF17924_low_25
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 25559079 - 25559229
Alignment:
| Q |
15 |
gagatgaacccaagtgaagaggagagctaggaatcacaagagaagtgacgattttggtgtattagctaagctttagaggaaaccaggtaagagggctaag |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |||||||| ||||||| ||| | || |
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| T |
25559079 |
gagaagaacccaagtgaagaggagagctaggaatcacaagaggagtgaagattttggtggattagctaagctttcgaggaaacaaggtaagggggat-ag |
25559177 |
T |
|
| Q |
115 |
gtttgttctacctaataagctataatcttgtttttcacttatgtgtcataat |
166 |
Q |
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||||||| || |||||||||||||||||||||||||||||||| |||||||| |
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| T |
25559178 |
gtttgttttatctaataagctataatcttgtttttcacttatgggtcataat |
25559229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 212
Target Start/End: Complemental strand, 26060160 - 26060007
Alignment:
| Q |
58 |
agtgacgattttggtgtattagctaagctttagaggaaaccaggtaagagggcta-aggtttgttctacctaataagctataatcttgtttttcacttat |
156 |
Q |
| |
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||||| |||||||||| ||||||||||||||| ||||| | ||||||||| ||| | |||||||| | |||||| |||||||| ||||||| ||||| |
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| T |
26060160 |
agtgaagattttggtgaattagctaagctttaaaggaatcaaggtaagag--ctatatatttgttcttcttaataatctataatcatgtttttagcttat |
26060063 |
T |
|
| Q |
157 |
gtgtcataatgattttggtatatttgtgaaaattgatggttatatgtgtaattttc |
212 |
Q |
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| | |||| | ||||| | |||||||||||||||| ||||||||||||||||| |
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|
| T |
26060062 |
gggccatatttgttttgattaatttgtgaaaattgataattatatgtgtaattttc |
26060007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 23341357 - 23341393
Alignment:
| Q |
127 |
taataagctataatcttgtttttcacttatgtgtcat |
163 |
Q |
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|||||||||||||||| |||||||||||||| ||||| |
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| T |
23341357 |
taataagctataatctagtttttcacttatgggtcat |
23341393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 16218128 - 16217900
Alignment:
| Q |
30 |
gaagaggagagctaggaatcacaagagaagtgacgattttggtgtattagctaagctttagaggaaaccaggtaagagggctaaggtttgttctacctaa |
129 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| |||||| || | | |||||| |||||||||||| ||||||| ||| || |||||||||||| ||| |
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| T |
16218128 |
gaaggggagagctaggaatcacaagaggagtgaaaattttgttggagtggctaagatttagaggaaacaaggtaagggggata-ggtttgttctacttaa |
16218030 |
T |
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| Q |
130 |
taagctataatcttgtttttcacttatgtgtcataatgattttggtatatttgtgaaaattgatggttat--atgtgtaattttcgtactcatatttaag |
227 |
Q |
| |
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||||||||||||||||||||| ||||| |||||| | ||||| | || || ||||||||| || | |||| |||||||||| || ||| ||||| |
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| T |
16218029 |
taagctataatcttgtttttcttttatgggtcatatttgttttgaatgaattatg-aaattgatgattttggatgt-taattttcgtgcttataattaag |
16217932 |
T |
|
| Q |
228 |
tggtgattttgggt-tgtgaaatttgttgaaa |
258 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |
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|
| T |
16217931 |
tggtgattttgggtatgtgaaatttgttgaaa |
16217900 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 258
Target Start/End: Complemental strand, 15064148 - 15063947
Alignment:
| Q |
58 |
agtgacgattttggtgtattagct-aagctttagaggaaaccaggtaagagggctaaggtttgttctacctaataagctataatcttgtttttcacttat |
156 |
Q |
| |
|
||||| |||||||||| ||||||| |||||| |||| ||||||| |||| ||| |||| ||||||||||||||||| |||||||| | ||||| |||||| |
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| T |
15064148 |
agtgaagattttggtgaattagcttaagcttaagag-aaaccagctaagggggataag-tttgttctacctaataatctataatcatatttttgacttat |
15064051 |
T |
|
| Q |
157 |
gtgtcataatgattttggtatatttgtg-aaaattgatggttatatgtgtaattttcgtactcatatttaagtggtgattttgggt-tgtgaaatttgtt |
254 |
Q |
| |
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| |||||| | ||||| | | ||||| |||||||||| |||||||||||||||| || || | ||||||||||| ||||||| ||||||| ||||| |
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| T |
15064050 |
gggtcatatttgttttgattgaattgtgaaaaattgatgattatatgtgtaatttttgtgcttggaattaagtggtgagtttgggtatgtgaaagttgtt |
15063951 |
T |
|
| Q |
255 |
gaaa |
258 |
Q |
| |
|
|||| |
|
|
| T |
15063950 |
gaaa |
15063947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 22707429 - 22707575
Alignment:
| Q |
65 |
attttggtgtattagct-aagctttagaggaaaccaggtaagagggctaaggtttgttctacctaataagctataatcttgtttttcacttatgtgtcat |
163 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||| | |||||| || || |||||||||| |||||||| |||||||| ||||||| |||||| | ||| |
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| T |
22707429 |
attttggtgaattagcttaagcttaagaggaatcaaggtaatgaggata-ggtttgttcttcctaataatctataatcatgtttttagcttatgggacat |
22707527 |
T |
|
| Q |
164 |
aatgattttggtatatttgtgaaaattgatggttatatgtgtaatttt |
211 |
Q |
| |
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| | ||||| | |||||||||||||||||| ||||||||||||||| |
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| T |
22707528 |
atttgttttgatttatttgtgaaaattgatgagtatatgtgtaatttt |
22707575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 24371232 - 24371102
Alignment:
| Q |
26 |
aagtgaagaggagagctaggaatcacaagagaagtgacgattttggtgtattagctaagctttagaggaaaccaggtaagagggctaaggtttgttctac |
125 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | ||| |||| | | ||||||| |||||| |||||||| | ||||| ||| | |||| |||||| |
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|
| T |
24371232 |
aagtgaagaggagagcttggaatcacaagaggaatgaagattcttgaagattagcttagctttggaggaaacaatgtaagggggat-aggtagattctac |
24371134 |
T |
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| Q |
126 |
ctaataagctataatcttgtttttcacttatg |
157 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
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|
| T |
24371133 |
ttaataagctataatctactttttcacttatg |
24371102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 259
Target Start/End: Complemental strand, 22090601 - 22090455
Alignment:
| Q |
115 |
gtttgttctacctaataagctataatcttgtttttcacttatgtgtcataatg-attttggtatatttgtgaaaattgatggttatatgtgtaattttcg |
213 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||| |||||| |||||||| |||||| | | ||||||||||||||| |||||||||||||||||| |
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|
| T |
22090601 |
gtttgttcttcctaataatctataatcatgtttttagcttatgggtcataatttattttgtttgaattgtgaaaattgatgattatatgtgtaattttcg |
22090502 |
T |
|
| Q |
214 |
tactcatatttaagtggtgattttgggt-tgtgaaatttgttgaaat |
259 |
Q |
| |
|
| || | |||||| |||| ||||||| ||||||| |||||||||| |
|
|
| T |
22090501 |
tgcttggaattaagtagtgaatttgggtatgtgaaagttgttgaaat |
22090455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 258
Target Start/End: Complemental strand, 12461700 - 12461557
Alignment:
| Q |
116 |
tttgttctacctaataagctataatcttgtttttcacttatgtgtcataatgattttggtatatttgtgaaaattgatggttatatgtgtaattttcgta |
215 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||| |||||| |||||| | ||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
12461700 |
tttgttcctcctaataatctataatcatgtttttagcttatgggtcatatttgttttgaatgatttgtgaaaattgatgattatatgtgtaattttcgtg |
12461601 |
T |
|
| Q |
216 |
ctcatatttaagtggtgattttgggt-tgtgaaatttgttgaaa |
258 |
Q |
| |
|
|| | ||||||||||| ||||||| | ||||| ||||||||| |
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|
| T |
12461600 |
cttgaaattaagtggtgaatttgggtatatgaaagttgttgaaa |
12461557 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 16367118 - 16367017
Alignment:
| Q |
113 |
aggtttgttctacctaataagctataatcttgtttttcacttatgtgtcataatgattttggtatatttgtgaaaattgatggttatatgtgtaattttc |
212 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||||||| ||||||| |||||| | ||||| | | ||||||||||||||| |||||||||||| |||| |
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|
| T |
16367118 |
aggtttgttcttcctaataatatataatcatgtttttaacttatgggtcatactttttttgattgaattgtgaaaattgatgattatatgtgtaactttc |
16367019 |
T |
|
| Q |
213 |
gt |
214 |
Q |
| |
|
|| |
|
|
| T |
16367018 |
gt |
16367017 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 258
Target Start/End: Complemental strand, 14264421 - 14264275
Alignment:
| Q |
113 |
aggtttgttctacctaataagctataatcttgtttttcacttatgtgtcataatgattttggtatatttgtgaaaattgatggttatatgtgtaattttc |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||||| | |||| |||||| | ||||| | ||| ||||||||| ||| |||||||| |||||||| |
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|
| T |
14264421 |
aggtttgttctacctaataatctataatcatatttttagcatatgggtcatatttgttttgattgattggtgaaaatttatgattatatgtctaattttc |
14264322 |
T |
|
| Q |
213 |
gtactcatatttaagtggtgattttgggt-tgtgaaatttgttgaaa |
258 |
Q |
| |
|
|| || | ||||||||||| |||| || ||||||| ||||||||| |
|
|
| T |
14264321 |
gtgcttgaaattaagtggtgaatttgagtatgtgaaaattgttgaaa |
14264275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 22784538 - 22784623
Alignment:
| Q |
20 |
gaacccaagtgaagaggagagctaggaatcacaagagaagtgacgattttggtgtattagctaagctttagaggaaaccaggtaag |
105 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||| | | | |||||||||| ||||||||| | ||| ||||||| ||||||| |
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|
| T |
22784538 |
gaacccaagtgaagatgagagctaggattcactagaggattaaggattttggtggattagctaatcattataggaaacaaggtaag |
22784623 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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