View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_low_28 (Length: 248)
Name: NF17924_low_28
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 32 - 243
Target Start/End: Original strand, 49669407 - 49669619
Alignment:
| Q |
32 |
tcaagtcttcctccttcattttccaagtcaactgacgtaacaaataagttatctttttagaccacctgattcatacatgacactgatgcatatctatttg |
131 |
Q |
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| T |
49669407 |
tcaagtcttcctccttcattttccaagtcaactgacgtaacaaataagttatctttttagaccacttgattcatacatgagaccgacacatatctatttg |
49669506 |
T |
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| Q |
132 |
tgaagacaatgtatgtataatgtaacagttcccactactagtacttaaccttcactacatcaatgaagaatcagttattttacttc-tttcatgttaaat |
230 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49669507 |
tgaagacattgtatgtataatgtaacagttcccaccactagtacttaaccttcactacatcaatgaagaatcagttattttacttcttttcatgttaaga |
49669606 |
T |
|
| Q |
231 |
atcctttgcttct |
243 |
Q |
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||||||| ||||| |
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| T |
49669607 |
atcctttacttct |
49669619 |
T |
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