View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17924_low_29 (Length: 248)

Name: NF17924_low_29
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17924_low_29
NF17924_low_29
[»] chr2 (3 HSPs)
chr2 (17-132)||(34433369-34433484)
chr2 (54-112)||(11240613-11240671)
chr2 (28-111)||(18511045-18511137)
[»] chr1 (4 HSPs)
chr1 (17-132)||(15884163-15884287)
chr1 (35-116)||(47085795-47085876)
chr1 (56-106)||(41892-41942)
chr1 (54-112)||(49243116-49243174)
[»] chr7 (2 HSPs)
chr7 (56-106)||(39634264-39634314)
chr7 (28-103)||(42752253-42752337)
[»] chr6 (2 HSPs)
chr6 (62-112)||(1312557-1312607)
chr6 (54-112)||(699491-699549)
[»] chr8 (5 HSPs)
chr8 (28-104)||(42600478-42600563)
chr8 (33-112)||(15206637-15206725)
chr8 (54-112)||(35615650-35615708)
chr8 (28-103)||(31246390-31246474)
chr8 (54-112)||(41289168-41289225)
[»] chr4 (5 HSPs)
chr4 (28-103)||(38305938-38306022)
chr4 (56-103)||(54488532-54488579)
chr4 (54-94)||(33721974-33722014)
chr4 (28-106)||(48257027-48257114)
chr4 (72-112)||(48556528-48556568)
[»] chr3 (2 HSPs)
chr3 (62-112)||(34561041-34561091)
chr3 (67-112)||(30736087-30736132)
[»] chr5 (3 HSPs)
chr5 (63-105)||(4569197-4569239)
chr5 (56-102)||(2483820-2483866)
chr5 (55-106)||(2861590-2861641)
[»] scaffold0031 (1 HSPs)
scaffold0031 (57-105)||(99608-99656)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 34433369 - 34433484
Alignment:
Q  17 acaataaagtaaaaaatgattcttataaattcatgttgtttggatcaaaattgattttgaatgcataattaccgaaatgggtattaatatctattttatt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  34433369 acaataaagtaaaaagtgattcttataaattcatgttgtttggatcaaaattgattttgaatgcataattaccaaaatggatattaatatcttttttatt 34433468  T
Q  117 tggggtatcaatatct 132  Q
    ||||||||||||||||    
T  34433469 tggggtatcaatatct 34433484  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 11240671 - 11240613
Alignment:
Q  54 gtttggatcaaaattgattttgaatgcataattaccgaaatgggtattaatatctattt 112  Q
    |||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  11240671 gtttggctcataattgattttgaacgcataattaccaaaatgggtattaatatctattt 11240613  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 18511137 - 18511045
Alignment:
Q  28 aaaaatgattcttataaattcatgttgtttggat---------caaaattgattttgaatgcataattaccgaaatgggtattaatatctatt 111  Q
    |||||||||||||||||| | |||||||||||||         |||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  18511137 aaaaatgattcttataaagtgatgttgtttggataatttaaatcaaaattgattttgaatgcataattaccaaaatgggtattgatatatatt 18511045  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 15884287 - 15884163
Alignment:
Q  17 acaataaagtaaaaaatgattcttataaattcatgttgtttggat---------caaaattgattttgaatgcataattaccgaaatgggtattaatatc 107  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||         |||||||||||||||||||||||||||| |||||||||||||||||    
T  15884287 acaataaagtaaaaagtgatttttataaattcatgttgtttggatagtttggatcaaaattgattttgaatgcataattaccaaaatgggtattaatatc 15884188  T
Q  108 tattttatttggggtatcaatatct 132  Q
    |||||||||||||||||||||||||    
T  15884187 tattttatttggggtatcaatatct 15884163  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 47085876 - 47085795
Alignment:
Q  35 attcttataaattcatgttgtttggatcaaaattgattttgaatgcataattaccgaaatgggtattaatatctattttatt 116  Q
    ||||||||||||||||||| |||| ||||||||| ||||| ||| | |||||||| |||||| ||||||||||||| |||||    
T  47085876 attcttataaattcatgttatttgaatcaaaattaattttaaatacgtaattaccaaaatggatattaatatctatattatt 47085795  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 41942 - 41892
Alignment:
Q  56 ttggatcaaaattgattttgaatgcataattaccgaaatgggtattaatat 106  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||||||||    
T  41942 ttggatcaaaatttattttgagtgcataattaccaaaatgggtattaatat 41892  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 49243116 - 49243174
Alignment:
Q  54 gtttggatcaaaattgattttgaatgcataattaccgaaatgggtattaatatctattt 112  Q
    ||||| |||| |||| ||||| |||||| ||||| | ||||||||||||||||||||||    
T  49243116 gtttgaatcagaattaatttttaatgcaaaattatcaaaatgggtattaatatctattt 49243174  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 39634264 - 39634314
Alignment:
Q  56 ttggatcaaaattgattttgaatgcataattaccgaaatgggtattaatat 106  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39634264 ttggatcaaaattgattttgaatgcataattaccaaaatgggtattaatat 39634314  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 42752253 - 42752337
Alignment:
Q  28 aaaaatgattcttataaattcatgttgtttggat---------caaaattgattttgaatgcataattaccgaaatgggtattaa 103  Q
    |||||| |||||||||||||||||||||||||||         |||||||||||||||||||||||||| | |||||||||||||    
T  42752253 aaaaataattcttataaattcatgttgtttggataacttagatcaaaattgattttgaatgcataattatcaaaatgggtattaa 42752337  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 1312557 - 1312607
Alignment:
Q  62 caaaattgattttgaatgcataattaccgaaatgggtattaatatctattt 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1312557 caaaattgattttgaatgcataattaccaaaatgggtattaatatctattt 1312607  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 699549 - 699491
Alignment:
Q  54 gtttggatcaaaattgattttgaatgcataattaccgaaatgggtattaatatctattt 112  Q
    ||||| |||||||| ||||||||||  | ||||||| ||||||||||||||||||||||    
T  699549 gtttgaatcaaaatcgattttgaatataaaattaccaaaatgggtattaatatctattt 699491  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 42600563 - 42600478
Alignment:
Q  28 aaaaatgattcttataaattcatgttgtttg---------gatcaaaattgattttgaatgcataattaccgaaatgggtattaat 104  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||  ||||||||||||||    
T  42600563 aaaaatgattcttataaattcatgttgtttgaataacttggatcaaaattgattttgaatgcataattactaaaatgggtattaat 42600478  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 15206725 - 15206637
Alignment:
Q  33 tgattcttataaattcatgttgtttggat---------caaaattgattttgaatgcataattaccgaaatgggtattaatatctattt 112  Q
    ||||||||| |||||||||||||||||||         |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  15206725 tgattcttaaaaattcatgttgtttggatagtttggcccaaaattgattttgaatgcataattaccaaaaagggtattaatatctattt 15206637  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 35615708 - 35615650
Alignment:
Q  54 gtttggatcaaaattgattttgaatgcataattaccgaaatgggtattaatatctattt 112  Q
    |||||| ||||||||||||||||||||||||||||  |||||| |||||||||||||||    
T  35615708 gtttggctcaaaattgattttgaatgcataattacgaaaatggatattaatatctattt 35615650  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 31246390 - 31246474
Alignment:
Q  28 aaaaatgattcttataaattcatgttgtttgg---------atcaaaattgattttgaatgcataattaccgaaatgggtattaa 103  Q
    |||| |||||||||||||||||||||||||||         ||||||||||||||| |||||||||||||| |||||||||||||    
T  31246390 aaaagtgattcttataaattcatgttgtttggataacttggatcaaaattgattttaaatgcataattaccaaaatgggtattaa 31246474  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 41289168 - 41289225
Alignment:
Q  54 gtttggatcaaaattgattttgaatgcataattaccgaaatgggtattaatatctattt 112  Q
    ||||| |||||||||||||||||||||| ||||||| |||| |||||||||||||||||    
T  41289168 gtttgaatcaaaattgattttgaatgcaaaattaccaaaat-ggtattaatatctattt 41289225  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 38306022 - 38305938
Alignment:
Q  28 aaaaatgattcttataaattcatgttgtttggat---------caaaattgattttgaatgcataattaccgaaatgggtattaa 103  Q
    |||| |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| |||||||||||||    
T  38306022 aaaagtgattcttataaattcatgttgtttggataacttggatcaaaattgattttgaatgcataattaccaaaatgggtattaa 38305938  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 54488579 - 54488532
Alignment:
Q  56 ttggatcaaaattgattttgaatgcataattaccgaaatgggtattaa 103  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  54488579 ttggatcaaaattgattttaaatgcataattacccaaatgggtattaa 54488532  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 33721974 - 33722014
Alignment:
Q  54 gtttggatcaaaattgattttgaatgcataattaccgaaat 94  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  33721974 gtttgaatcaaaattgattttgaatgcataattacagaaat 33722014  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 48257114 - 48257027
Alignment:
Q  28 aaaaatgattcttataaattcatgttgtttggat---------caaaattgattttgaatgcataattaccgaaatgggtattaatat 106  Q
    |||| |||||||||||||||||||||||||||||         |||||||||||||||||||| ||||||  |||||| ||| |||||    
T  48257114 aaaagtgattcttataaattcatgttgtttggataaattggatcaaaattgattttgaatgcaaaattactaaaatggatatcaatat 48257027  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 48556568 - 48556528
Alignment:
Q  72 tttgaatgcataattaccgaaatgggtattaatatctattt 112  Q
    |||||||||||||||||| ||||| |||| |||||||||||    
T  48556568 tttgaatgcataattaccaaaatgagtataaatatctattt 48556528  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 34561091 - 34561041
Alignment:
Q  62 caaaattgattttgaatgcataattaccgaaatgggtattaatatctattt 112  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  34561091 caaaattgattttgaatgcataattactaaaatgggtattaatatctattt 34561041  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 30736132 - 30736087
Alignment:
Q  67 ttgattttgaatgcataattaccgaaatgggtattaatatctattt 112  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  30736132 ttgattttgaatgtataattaccaaaatgagtattaatatctattt 30736087  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 4569197 - 4569239
Alignment:
Q  63 aaaattgattttgaatgcataattaccgaaatgggtattaata 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  4569197 aaaattgattttgaatgcataattaccaaaatgggtattaata 4569239  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 2483820 - 2483866
Alignment:
Q  56 ttggatcaaaattgattttgaatgcataattaccgaaatgggtatta 102  Q
    |||||| ||||||||||||||||||||||||||| |||||| |||||    
T  2483820 ttggatgaaaattgattttgaatgcataattaccaaaatggttatta 2483866  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 2861641 - 2861590
Alignment:
Q  55 tttggatcaaaattgattttgaatgcataattaccgaaatgggtattaatat 106  Q
    ||||||||||||||||||||||||||| ||||||  || ||||||| |||||    
T  2861641 tttggatcaaaattgattttgaatgcaaaattactaaagtgggtatcaatat 2861590  T

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Target: scaffold0031 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 99656 - 99608
Alignment:
Q  57 tggatcaaaattgattttgaatgcataattaccgaaatgggtattaata 105  Q
    ||||||||||||||||||||||||| ||||||| ||||| || ||||||    
T  99656 tggatcaaaattgattttgaatgcacaattaccaaaatgagttttaata 99608  T

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