View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_low_34 (Length: 223)
Name: NF17924_low_34
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 28507302 - 28507101
Alignment:
| Q |
1 |
acgtggagtggtatgcactgattgggtcccacaaatgaagatattaggtcacatagcagttggtggattcttgactcatgcagggtggacatcggtggta |
100 |
Q |
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| T |
28507302 |
acgtggagtggtatgcactgattgggtcccacaaatgaagatattaggtcacatggcagttggtggattcttgactcatgcagggtggacatcggtggta |
28507203 |
T |
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| Q |
101 |
gaggccgttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcag |
200 |
Q |
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| T |
28507202 |
gaggcagttcaacatgagaagccacttgtgttgttgacgtatctttcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcag |
28507103 |
T |
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| Q |
201 |
tg |
202 |
Q |
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|| |
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| T |
28507102 |
tg |
28507101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 28494756 - 28494555
Alignment:
| Q |
1 |
acgtggagtggtatgcactgattgggtcccacaaatgaagatattaggtcacatagcagttggtggattcttgactcatgcagggtggacatcggtggta |
100 |
Q |
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| T |
28494756 |
acgtggagtggtatgcactgaatgggccccacaaatgaagatattaagccacgtggcagttggtggattcttgactcatgcagggtggacatcggtggta |
28494657 |
T |
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| Q |
101 |
gaggccgttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcag |
200 |
Q |
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| T |
28494656 |
gaagcagttcaacatgagaagccacttgtgttgttaacgtgtcttgcagatcaaggaataaatgcaagaatgttggaagaaaagaagatgggatactcag |
28494557 |
T |
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| Q |
201 |
tg |
202 |
Q |
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|| |
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| T |
28494556 |
tg |
28494555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 28491433 - 28491247
Alignment:
| Q |
5 |
ggagtggtatgcactgattgggtcccacaaatgaagatattaggtcacatagcagttggtggattcttgactcatgcagggtggacatcggtggtagagg |
104 |
Q |
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||||| |||||||||||||||| || ||||||||||||||||| ||||| ||| |||||| ||||| |||| ||||| |||||||| ||||| || | |
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| T |
28491433 |
ggagttgtatgcactgattgggctccgcaaatgaagatattagggcacatggcaattggtgtgttcttttctcacgcaggttggacatcagtggtggaag |
28491334 |
T |
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| Q |
105 |
ccgttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatgg |
191 |
Q |
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| T |
28491333 |
cagttcaaaacgagaagccacttgtgttgatgacatttcttgtagaccagggaataaatgcgaaggtgttggaagaaaagaagatgg |
28491247 |
T |
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