View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_low_36 (Length: 208)
Name: NF17924_low_36
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 28001690 - 28001782
Alignment:
| Q |
93 |
atgtaacaaaaatatcatcaccataaacaaaaagtataattagttttcctagattcattacaattatatagtgatcaagttaagaatataaca |
185 |
Q |
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| T |
28001690 |
atgtaacaacaatatcatcaacataaacaaaaagtataattagttttcctagattcattacaattatatagtgatcaagttaagaatataaca |
28001782 |
T |
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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 28052919 - 28052998
Alignment:
| Q |
103 |
aatatcatcaccataaacaaaaagtataattagttttcctagattcattacaattatatagt--gatcaagttaagaata |
180 |
Q |
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| T |
28052919 |
aatatcatcaacataaacaaaaagttcaattagtttttctagattcattacaaatataaagtgcgctcaagttaagaata |
28052998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 28063344 - 28063423
Alignment:
| Q |
103 |
aatatcatcaccataaacaaaaagtataattagttttcctagattcattacaattatatagt--gatcaagttaagaata |
180 |
Q |
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| T |
28063344 |
aatatcatcaacataaacaaaaagttcaattagtttttctagattcattacaaatataaagtgcgctcaagttaagaata |
28063423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 28001612 - 28001647
Alignment:
| Q |
60 |
tgagtcgttcaaggtccttcatttcaaactctaatg |
95 |
Q |
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| T |
28001612 |
tgagtcgttcaaggtccttcatttcaaactctaatg |
28001647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 28052779 - 28052826
Alignment:
| Q |
9 |
gagataaaaattcctttctttgagtaagctacctcaattttgagaaat |
56 |
Q |
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| T |
28052779 |
gagatacaaattcctttctttgagtgagttacctcaattttaagaaat |
28052826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 28063204 - 28063251
Alignment:
| Q |
9 |
gagataaaaattcctttctttgagtaagctacctcaattttgagaaat |
56 |
Q |
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| T |
28063204 |
gagatacaaattcctttctttgagtgagttacctcaattttaagaaat |
28063251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 27906820 - 27906907
Alignment:
| Q |
9 |
gagataaaaattcctttctttgagtaagctacctcaatt-ttgagaaatacttgagtcgttcaaggtccttcatttcaaactctaatg |
95 |
Q |
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| T |
27906820 |
gagagaaaaatttcttgctttgagtaggctacctcaattcccaagaaatactcgagttgctcaaggtccttcatctcaaactctaatg |
27906907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 34416233 - 34416312
Alignment:
| Q |
9 |
gagataaaaattcctttctttgagtaagctacctcaattttga-gaaatacttgagtcgttcaaggtccttcatttcaaa |
87 |
Q |
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| T |
34416233 |
gagatacatattcctttatttgagtgagctacctcaattctaaagaaatacttgagttgttcaatgtcattcatttcaaa |
34416312 |
T |
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