View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_low_4 (Length: 620)
Name: NF17924_low_4
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_low_4 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 18 - 620
Target Start/End: Complemental strand, 27460550 - 27459942
Alignment:
| Q |
18 |
gattgcactccagatctaccatttctatttccccactgttatcttgcaagaaggaaacgttgaagtagaagctggtgtgaatgattcaactccaacatgc |
117 |
Q |
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| T |
27460550 |
gattgcactccagatctaccatttctatttccccactgttatcttgcgagaaggaaacgttgaagtagaagctggtgtggatgattcaactccaacatgc |
27460451 |
T |
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| Q |
118 |
atgcattacagtcgcttttttggtactctctaatctcaaatcacaaatgttgttttattctttagtgatatgcacatttcttttctgatatgatttattt |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27460450 |
atgcattactgtcgcttttttggtactctctaatctcaaatcacaaatgttgttttattctttagtgatatgcacatttcttttctgatatgatttattt |
27460351 |
T |
|
| Q |
218 |
caaacaaattggtttccatcaggcaatgatgttgttatcagcttttatagatcaaacaatatattaaag---------ttgtggcattggcttggtgttt |
308 |
Q |
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| T |
27460350 |
caaacaaattggtttccatcaggcaatgatgttgttatcagcttttatagatcaaacaatatattaatgtaagaaccttagtggcattggcttggtgttt |
27460251 |
T |
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| Q |
309 |
ttagtatctgtttcnnnnnnntaccattttttgtggtttatttattctacagatattgataatgcagccatgtttgagnnnnnnngttgaatctgagcct |
408 |
Q |
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| T |
27460250 |
ttagtatctgtttc-aaaaaatatcattttttgtggtttatttattctacagatattgataatgcagccatgtttgagaaaaaaagttgaatctgagcct |
27460152 |
T |
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| Q |
409 |
tcctttcaaatcctaaagttagggtttttaaactcattaatcgttagtttaagtatgaggctctacattcacagatataaggttgttttgagaaatgtta |
508 |
Q |
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| T |
27460151 |
tcctttcaaatcctaaagttagggtttttaaactcattaatcgttagtttaagtatgaggctctacattcacagatataaggttgttttgagaaatgtta |
27460052 |
T |
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| Q |
509 |
cctctctgtgttaatgtggttgccaatgattcgtctccggagaaatttgttaacatctctcaacacacatatacttcctctttccttcaatatatgataa |
608 |
Q |
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| T |
27460051 |
c--ctttgtgttaatgtggttgccaatgattcgtctccggagaattttgttaacatctctcaacacacatatacttcctctttccttcaatatatgataa |
27459954 |
T |
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| Q |
609 |
ttgctcttctcc |
620 |
Q |
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||| |||||||| |
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| T |
27459953 |
ttgttcttctcc |
27459942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 394 - 601
Target Start/End: Complemental strand, 27458230 - 27458023
Alignment:
| Q |
394 |
gttgaatctgagccttcctttcaaatcctaaagttagggtttttaaactcattaatcgttagtttaagtatgaggct---ctacattcacagatataagg |
490 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| |||| |
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| T |
27458230 |
gttgaatctgagccttcctttcaaaccctaaagttaaggtttttaaactcattaatcattagtttaagtatgaggctccaccacattcacagataaaagg |
27458131 |
T |
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| Q |
491 |
ttgttttgagaaatgttacctctctgtgttaatgtggttgccaatgattcgtctccggagaaatttgttaacatctctcaacacacatatacttcctctt |
590 |
Q |
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|| |||||||| |||| ||||||||||||| | |||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||| | |||| | |
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| T |
27458130 |
tttttttgagagttgttgcctctctgtgttattatggtagccaatgattcgtct-cggagaaattttttaaca--cctcaacacacatatattccctcct |
27458034 |
T |
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| Q |
591 |
tccttcaatat |
601 |
Q |
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| T |
27458033 |
tccttcaatat |
27458023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 452 - 575
Target Start/End: Complemental strand, 27489246 - 27489124
Alignment:
| Q |
452 |
ttagtttaagtatgaggctctacattcacagatataaggttgttttgagaaatgttacctctctgtgttaatgtggttgccaatgattcgtctccggaga |
551 |
Q |
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|||||||||||||||||||| ||| ||| ||| |||||||||||||||| |||| |||||||||||| |||||| ||| ||||||||||| ||| || |
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| T |
27489246 |
ttagtttaagtatgaggctccacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtct-cggtga |
27489148 |
T |
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| Q |
552 |
aatttgttaacatctctcaacaca |
575 |
Q |
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|||||||||||| ||||||||||| |
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| T |
27489147 |
aatttgttaacacctctcaacaca |
27489124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 440 - 583
Target Start/End: Complemental strand, 27485797 - 27485655
Alignment:
| Q |
440 |
actcattaatcgttagtttaagtatgaggctctacattcacagatataaggttgttttgagaaatgttacctctctgtgttaatgtggttgccaatgatt |
539 |
Q |
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| T |
27485797 |
actcatttgtcgttagtttaagtatgaggctccacactcacagagttaaggttgttttgagagctgttgcccctctgtgttgctgtggtagccgatgact |
27485698 |
T |
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| Q |
540 |
cgtctccggagaaatttgttaacatctctcaacacacatatact |
583 |
Q |
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| T |
27485697 |
cgtct-cagtcaaatttataaacagctctcaacacatatatact |
27485655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 27456702 - 27456647
Alignment:
| Q |
176 |
tctttagtgatatgcacatttcttttctgatatgatttatttcaaacaaattggttt |
232 |
Q |
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| T |
27456702 |
tctttagtgatatgcacatttcttttctgatatgatttattt-aaaaaaattggttt |
27456647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 27458496 - 27458455
Alignment:
| Q |
176 |
tctttagtgatatgcacatttcttttctgatatgatttattt |
217 |
Q |
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| T |
27458496 |
tctttagtgatatgcacatttcttttctgatatgatttattt |
27458455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 349 - 382
Target Start/End: Complemental strand, 27485888 - 27485855
Alignment:
| Q |
349 |
tttattctacagatattgataatgcagccatgtt |
382 |
Q |
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| T |
27485888 |
tttattctacagatattgataatgcagccatgtt |
27485855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 27458424 - 27458384
Alignment:
| Q |
238 |
aggcaatgatgttgttatcagcttttatagatcaaacaata |
278 |
Q |
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| T |
27458424 |
aggcagtgatgttgttatcagcttttatagatcagacaata |
27458384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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