View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17924_low_7 (Length: 532)

Name: NF17924_low_7
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17924_low_7
NF17924_low_7
[»] chr6 (6 HSPs)
chr6 (163-288)||(27733629-27733754)
chr6 (1-105)||(27733389-27733493)
chr6 (452-513)||(28983520-28983580)
chr6 (317-420)||(13436811-13436914)
chr6 (329-389)||(6919639-6919700)
chr6 (452-492)||(29181642-29181682)
[»] chr8 (10 HSPs)
chr8 (366-510)||(17011531-17011682)
chr8 (366-510)||(17545519-17545670)
chr8 (316-420)||(36315874-36315979)
chr8 (452-508)||(36316039-36316095)
chr8 (317-396)||(26998418-26998497)
chr8 (317-451)||(11364459-11364598)
chr8 (439-510)||(37263935-37264006)
chr8 (366-421)||(9617795-9617849)
chr8 (452-510)||(26998275-26998333)
chr8 (362-420)||(39721128-39721186)
[»] chr7 (5 HSPs)
chr7 (463-521)||(29346832-29346890)
chr7 (358-420)||(29346698-29346760)
chr7 (452-506)||(29293433-29293486)
chr7 (464-510)||(32471188-32471233)
chr7 (362-403)||(29292210-29292251)
[»] chr2 (4 HSPs)
chr2 (382-515)||(5700058-5700206)
chr2 (319-421)||(13266986-13267089)
chr2 (317-359)||(19261588-19261630)
chr2 (452-510)||(19261743-19261800)
[»] chr5 (3 HSPs)
chr5 (317-420)||(42954776-42954879)
chr5 (382-420)||(15026967-15027005)
chr5 (452-513)||(42954939-42955001)
[»] chr4 (4 HSPs)
chr4 (463-510)||(23406634-23406681)
chr4 (472-509)||(49272623-49272660)
chr4 (456-510)||(4578367-4578420)
chr4 (431-489)||(55080875-55080933)
[»] chr1 (1 HSPs)
chr1 (345-420)||(4625509-4625585)


Alignment Details
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 27733629 - 27733754
Alignment:
Q  163 cttcactcatttgagtttttgattgctgagatattgaggcctttgaagtattaatagccttgcttgcaccgtcatttttgaaaggctctgcaggaacatt 262  Q
    ||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||    
T  27733629 cttcactcatttgagttttcgattgctgggatattgaggccttcgaagtattactagccttgcttgcaccgtcattttggcaaggctctgcaggaccatt 27733728  T
Q  263 aatcttccatgattgcaaatcgaaca 288  Q
    |||||||||||| |||||||||||||    
T  27733729 aatcttccatgagtgcaaatcgaaca 27733754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 27733389 - 27733493
Alignment:
Q  1 taagctgctgccgatcaatttccctgaattctttgttttgcacaaggttaaactttggttctgtagaggctttaccactacttccaagccacaagggttt 100  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27733389 taagctgctgccgatcaatttccctagattctttgttttgcacaaggttaatctttggttctgtagaggctttaccactacttccaagccacaagggttt 27733488  T
Q  101 tttct 105  Q
    |||||    
T  27733489 tttct 27733493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 452 - 513
Target Start/End: Complemental strand, 28983580 - 28983520
Alignment:
Q  452 attactctactagagagtaccaaacggagagaggagagactttcatcatttttcttcatgcc 513  Q
    ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||    
T  28983580 attactctattagagagtaccaaacggagagaggggagac-ttcatcatttttctacatgcc 28983520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 420
Target Start/End: Complemental strand, 13436914 - 13436811
Alignment:
Q  317 tgtaatggttctcaaaattgagagtgaaataaaatggataattgc-aattgattattaattcaaatgtaaaattgatagattagaactcaattaaaattg 415  Q
    |||||||||||  |||||||| | || ||||||||| |||||||  |||||||| | || | ||| |||||||||||||||| |||||||||||||||||    
T  13436914 tgtaatggttcctaaaattgataatggaataaaatg-ataattgtgaattgattgtgaaatgaaaggtaaaattgatagattggaactcaattaaaattg 13436816  T
Q  416 atgtt 420  Q
    |||||    
T  13436815 atgtt 13436811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 6919700 - 6919639
Alignment:
Q  329 caaaattgagagtgaaataaaatggataattgc-aattgattattaattcaaatgtaaaatt 389  Q
    ||||||||||| ||  ||||||||||||||||| ||||||||||||| ||||| ||||||||    
T  6919700 caaaattgagaatgtgataaaatggataattgcaaattgattattaaatcaaaggtaaaatt 6919639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 29181682 - 29181642
Alignment:
Q  452 attactctactagagagtaccaaacggagagaggagagact 492  Q
    |||||||||||| ||||||| ||| ||||||||||||||||    
T  29181682 attactctactaaagagtactaaagggagagaggagagact 29181642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 366 - 510
Target Start/End: Original strand, 17011531 - 17011682
Alignment:
Q  366 gattattaattcaaatgtaaaattgatagattagaactcaattaaaattgatgtt-----tacata--aaggagaaaggaaaagatagaagaaattactc 458  Q
    |||||||||||||||  |||||||||||| | ||||| ||||||||||||| |||     ||||||  ||||||||| ||||||||||||||||||||||    
T  17011531 gattattaattcaaagataaaattgatagttgagaacccaattaaaattgaagttcttggtacatagaaaggagaaaagaaaagatagaagaaattactc 17011630  T
Q  459 tactagagagtaccaaacggagagaggagagactttcatcatttttcttcat 510  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  17011631 tactagagagtaccaaagggagagaggagagacttgcatcatttttcttcat 17011682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 366 - 510
Target Start/End: Complemental strand, 17545670 - 17545519
Alignment:
Q  366 gattattaattcaaatgtaaaattgatagattagaactcaattaaaattgatgtt-----tacata--aaggagaaaggaaaagatagaagaaattactc 458  Q
    |||||||||||||||  |||||||||||| | ||||| ||||||||||||| |||     ||||||  ||||||||| ||||||||||||||||||||||    
T  17545670 gattattaattcaaagataaaattgatagttgagaacccaattaaaattgaagttcttggtacatagaaaggagaaaagaaaagatagaagaaattactc 17545571  T
Q  459 tactagagagtaccaaacggagagaggagagactttcatcatttttcttcat 510  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  17545570 tactagagagtaccaaagggagagaggagagacttgcatcatttttcttcat 17545519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 420
Target Start/End: Original strand, 36315874 - 36315979
Alignment:
Q  316 ctgtaatggttctcaaaattgagagtgaaataaaatggataattgcaatt-gattattaattcaaatgtaaaattgatagattagaactcaattaaaatt 414  Q
    |||||||| ||||||||||||||| ||||||||||| ||||| || |||| ||||||| ||| ||| |||||||| |||| | |||||||||||||||||    
T  36315874 ctgtaatgattctcaaaattgagaatgaaataaaattgataaatgtaattggattatttatttaaaggtaaaattaatagttgagaactcaattaaaatt 36315973  T
Q  415 gatgtt 420  Q
     |||||    
T  36315974 tatgtt 36315979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 452 - 508
Target Start/End: Original strand, 36316039 - 36316095
Alignment:
Q  452 attactctactagagagtaccaaacggagagaggagagactttcatcatttttcttc 508  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  36316039 attactctactagagagtatcaaagggagagaggagagattttcatcatttttcttc 36316095  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 317 - 396
Target Start/End: Complemental strand, 26998497 - 26998418
Alignment:
Q  317 tgtaatggttctcaaaattgagagtgaaataaaatggataattgcaattgattattaattcaaatgtaaaattgatagat 396  Q
    ||||| |||||  |||||||||| |||||||||||||||||||| ||||||||||||| | |||  ||||||||||||||    
T  26998497 tgtaagggttcctaaaattgagaatgaaataaaatggataattgtaattgattattaacttaaagataaaattgatagat 26998418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 451
Target Start/End: Original strand, 11364459 - 11364598
Alignment:
Q  317 tgtaatggttctcaaaattgagagtgaaataaaatggataattgcaa-ttgattattaattcaaatgtaaaattgatagattagaactcaattaaaattg 415  Q
    |||||||||||  |||||||||| ||  ||||| || ||||||| || ||| ||||||| ||||| ||||||||||  ||||||||| ||||||||||||    
T  11364459 tgtaatggttcctaaaattgagaatgtgataaattg-ataattgtaaattgtttattaaatcaaaggtaaaattgagggattagaacccaattaaaattg 11364557  T
Q  416 atgtt-----tacataaaggagaaaggaaaagatagaagaa 451  Q
     ||||     |||||||| | ||||||||||||||||||||    
T  11364558 gtgttcttagtacataaaagggaaaggaaaagatagaagaa 11364598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 510
Target Start/End: Complemental strand, 37264006 - 37263935
Alignment:
Q  439 aaagatagaagaaa--ttactctactagagagtaccaaacggagagaggagagactttcatcatttttcttcat 510  Q
    |||||||||||||   |||||||||||||||||| ||||  ||||||||||||| |||||||||||||| ||||    
T  37264006 aaagatagaagaagacttactctactagagagtatcaaa--gagagaggagagattttcatcatttttcatcat 37263935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 421
Target Start/End: Original strand, 9617795 - 9617849
Alignment:
Q  366 gattattaattcaaatgtaaaattgatagattagaactcaattaaaattgatgttt 421  Q
    ||||||||||||||| ||||||||||||| | |||||  |||||||||||||||||    
T  9617795 gattattaattcaaa-gtaaaattgatagttgagaaccgaattaaaattgatgttt 9617849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 510
Target Start/End: Complemental strand, 26998333 - 26998275
Alignment:
Q  452 attactctactagagagtaccaaacggagagaggagagactttcatcatttttcttcat 510  Q
    |||||| ||||||||||||| |||  |||||| |||||||| |||||||||| ||||||    
T  26998333 attactttactagagagtactaaagagagagaagagagactctcatcattttacttcat 26998275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 39721128 - 39721186
Alignment:
Q  362 aattgattattaattcaaatgtaaaattgatagattagaactcaattaaaattgatgtt 420  Q
    ||||||||||||||||||| |||||||||| |||| |||||| | ||| | ||||||||    
T  39721128 aattgattattaattcaaaggtaaaattgagagatgagaacttacttagagttgatgtt 39721186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 463 - 521
Target Start/End: Original strand, 29346832 - 29346890
Alignment:
Q  463 agagagtaccaaacggagagaggagagactttcatcatttttcttcatgcctttgcttc 521  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  29346832 agagagtaccaaagggagaaaggagagactttcatcatttttcttcatgcctttgcttc 29346890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 29346698 - 29346760
Alignment:
Q  358 ttgcaattgattattaattcaaatgtaaaattgatagattagaactcaattaaaattgatgtt 420  Q
    ||||||| ||||||||||||||| ||||||||||||| | ||||| |||||||||||||||||    
T  29346698 ttgcaatggattattaattcaaaagtaaaattgatagttgagaacccaattaaaattgatgtt 29346760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 506
Target Start/End: Original strand, 29293433 - 29293486
Alignment:
Q  452 attactctactagagagtaccaaacggagagaggagagactttcatcatttttct 506  Q
    ||||||||| ||||||||||| ||  |||||||||||||| ||||||||||||||    
T  29293433 attactctattagagagtacccaaaagagagaggagagac-ttcatcatttttct 29293486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 510
Target Start/End: Original strand, 32471188 - 32471233
Alignment:
Q  464 gagagtaccaaacggagagaggagagactttcatcatttttcttcat 510  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||||||    
T  32471188 gagagtaccaaagggagagaggagagac-ttcatcaattttcttcat 32471233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 403
Target Start/End: Original strand, 29292210 - 29292251
Alignment:
Q  362 aattgattattaattcaaatgtaaaattgatagattagaact 403  Q
    ||||||||||||| | ||| ||||||||||||||||||||||    
T  29292210 aattgattattaagtgaaaggtaaaattgatagattagaact 29292251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 382 - 515
Target Start/End: Complemental strand, 5700206 - 5700058
Alignment:
Q  382 gtaaaattgatagattagaactcaattaaaattgatgtt-----tacata-aaggagaaaggaaaagatagaagaa---------attactctactagag 466  Q
    |||||||||||||||||||||||||||||||||||||||     |||||| ||  |  || | |||||||||||||         |||||||||||||||    
T  5700206 gtaaaattgatagattagaactcaattaaaattgatgttcttggtacatagaaacattaaaggaaagatagaagaagactaagtcattactctactagag 5700107  T
Q  467 agtaccaaacggagagaggagagactttcatcatttttcttcatgcctt 515  Q
    ||||||||| |||||||||||||||||  ||||||||||||||| ||||    
T  5700106 agtaccaaagggagagaggagagacttcaatcatttttcttcatacctt 5700058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 421
Target Start/End: Complemental strand, 13267089 - 13266986
Alignment:
Q  319 taatggttctcaaaattgagagtgaaataaaatggataattgcaattga-ttattaattcaaatgtaaaattgatagattagaactcaattaaaattgat 417  Q
    ||||| ||||||||||||||| || |||||||||||||||||||| | | ||||  | ||||| ||  |||||||| |||||||||||||||||||||||    
T  13267089 taatgattctcaaaattgagaatggaataaaatggataattgcaaatcaattatggaatcaaaggttgaattgatatattagaactcaattaaaattgat 13266990  T
Q  418 gttt 421  Q
    ||||    
T  13266989 gttt 13266986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 19261588 - 19261630
Alignment:
Q  317 tgtaatggttctcaaaattgagagtgaaataaaatggataatt 359  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  19261588 tgtaatggttctcaaaattgcgagtgaaataaaatggataatt 19261630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 452 - 510
Target Start/End: Original strand, 19261743 - 19261800
Alignment:
Q  452 attactctactagagagtaccaaacggagagaggagagactttcatcatttttcttcat 510  Q
    |||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||    
T  19261743 attactctacta-agagtatcaaagggagagaggatagactttcatcatttttcttcat 19261800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 420
Target Start/End: Original strand, 42954776 - 42954879
Alignment:
Q  317 tgtaatggttctcaaaattgagagtgaaataaaatggataattgc-aattgattattaattcaaatgtaaaattgatagattagaactcaattaaaattg 415  Q
    ||||||||||   |||||||| | || ||||||||| |||||||  |||||||| | || | ||| ||||||||||||||||||||||||||||||||||    
T  42954776 tgtaatggtttctaaaattgataatggaataaaatg-ataattgtgaattgattgtgaaatgaaaggtaaaattgatagattagaactcaattaaaattg 42954874  T
Q  416 atgtt 420  Q
    |||||    
T  42954875 atgtt 42954879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 15026967 - 15027005
Alignment:
Q  382 gtaaaattgatagattagaactcaattaaaattgatgtt 420  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  15026967 gtaaaattgatagattagaactcaattaaaattaatgtt 15027005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 513
Target Start/End: Original strand, 42954939 - 42955001
Alignment:
Q  452 attactctactagagagtaccaaacggaga--gaggagagactttcatcatttttcttcatgcc 513  Q
    ||||||||| |||||||| ||||| |||||  |||||| ||||||||||||||||| |||||||    
T  42954939 attactctattagagagt-ccaaagggagaaagaggagtgactttcatcatttttcatcatgcc 42955001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 510
Target Start/End: Complemental strand, 23406681 - 23406634
Alignment:
Q  463 agagagtaccaaacggagagaggagagactttcatcatttttcttcat 510  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||    
T  23406681 agagagtaccaaagagagagaggagagactttcatcatttttcttcat 23406634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 49272660 - 49272623
Alignment:
Q  472 caaacggagagaggagagactttcatcatttttcttca 509  Q
    |||| |||||||||||||||||||||||||||||||||    
T  49272660 caaagggagagaggagagactttcatcatttttcttca 49272623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 510
Target Start/End: Complemental strand, 4578420 - 4578367
Alignment:
Q  456 ctctactagagagtaccaaacggagagaggagagactttcatcatttttcttcat 510  Q
    ||||||||||||||||||||  | |||||||||||| |||||||||||| |||||    
T  4578420 ctctactagagagtaccaaagagggagaggagagac-ttcatcattttttttcat 4578367  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 489
Target Start/End: Complemental strand, 55080933 - 55080875
Alignment:
Q  431 agaaaggaaaagatagaagaaattactctactagagagtaccaaacggagagaggagag 489  Q
    ||||||| ||||||| |||| |||||||||  ||||||| ||||| |||||||||||||    
T  55080933 agaaagggaaagatacaagagattactctataagagagtgccaaagggagagaggagag 55080875  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 420
Target Start/End: Complemental strand, 4625585 - 4625509
Alignment:
Q  345 ataaaatggataattgcaa-ttgattattaattcaaatgtaaaattgatagattagaactcaattaaaattgatgtt 420  Q
    ||||||||||||||||||| ||||| || || ||||  ||||||||||||||| ||||| ||| |||| ||| ||||    
T  4625585 ataaaatggataattgcaaattgatcatgaaatcaatggtaaaattgatagatgagaacacaactaaagttggtgtt 4625509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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