View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17924_low_8 (Length: 505)

Name: NF17924_low_8
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17924_low_8
NF17924_low_8
[»] chr2 (2 HSPs)
chr2 (6-257)||(9141936-9142187)
chr2 (254-482)||(9142244-9142470)
[»] chr4 (5 HSPs)
chr4 (180-251)||(36012506-36012577)
chr4 (262-342)||(50743708-50743787)
chr4 (151-227)||(50743812-50743887)
chr4 (270-342)||(55678896-55678967)
chr4 (275-332)||(36011353-36011411)
[»] chr8 (2 HSPs)
chr8 (256-332)||(3119303-3119379)
chr8 (168-238)||(3119147-3119219)
[»] chr3 (1 HSPs)
chr3 (153-238)||(32902224-32902311)
[»] chr1 (1 HSPs)
chr1 (262-342)||(33420817-33420896)
[»] chr7 (1 HSPs)
chr7 (69-112)||(19340822-19340864)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 9141936 - 9142187
Alignment:
Q  6 tggcatatgatcccttttctgannnnnnnnncactgttattagattttctctctcttgattgaatgtgaccaaatgcaatgtgtttggtcctgtgaccaa 105  Q
    ||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9141936 tggcatatgatcccttttctgatttttttttcactgttattagattttctctctcttgattgaatgtgaccaaatgcaatgtgtttggtcctgtgaccaa 9142035  T
Q  106 ctaagaacggcataaatagaacgcagaacacacaatcaaaatcatcatgaattgaaatgagggaaaaaacataaatgaatcaagaacacaattttctaac 205  Q
    | |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9142036 ccaagaacagcataaatagaatgcagaacacacaatcaaaatcatcatgaattgaaatgagggaaaaaacataaatgaatcaagaacacaattttctaac 9142135  T
Q  206 cttccttatttcaaaattgctttcaaatcttgcaaacttgctgttatgtgga 257  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9142136 cttccttgtttcaaaattgctttcaaatcttgcaaacttgctgttatgtgga 9142187  T

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Target: chr2; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 254 - 482
Target Start/End: Original strand, 9142244 - 9142470
Alignment:
Q  254 tggaagaaga-gagaaagattgcaaaggttttggatgaaattggaaataaaattttatttaagggtgtttttgtcatttatggttgtaactagaaagctn 352  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9142244 tggaagaagaagagagagattgcaaaggttttggatgaaattggaaattaaattttatttaagggtgtttttgtcatttatggttgtaactagaaagct- 9142342  T
Q  353 nnnnnntctcagtaaaagagcacgaaattggaagccagattaggaaatttcctaatatatgatatatttggtaagctaaatgatatttannnnnnnnggt 452  Q
          |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  9142343 aaaaaatctcggtaaaagagcacgaaattggaagccagtttaggaaatttcctaatatatgatatatttggtaagctaaatgatattt--tttttttggt 9142440  T
Q  453 acaataagctaaatgatttgtcaaggtgtg 482  Q
    ||||||||||||||||||||||||||||||    
T  9142441 acaataagctaaatgatttgtcaaggtgtg 9142470  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 36012577 - 36012506
Alignment:
Q  180 atgaatcaagaacacaattttctaaccttccttatttcaaaattgctttcaaatcttgcaaacttgctgtta 251  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  36012577 atgaatcaagaacccaattttctaaccttgcttgtttcaaaattgctttgaaatcttgcaaacttgctgtta 36012506  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 50743787 - 50743708
Alignment:
Q  262 gagagaaagattgcaaaggttttggatgaaattggaaataaaattttatttaagggtgtttttgtcatttatggttgtaac 342  Q
    ||||||| ||| |||||| |||||| ||||||  ||| |||| ||||||||||||||||| ||||||||||||| ||||||    
T  50743787 gagagaacgatagcaaagattttgggtgaaatgagaattaaa-ttttatttaagggtgttattgtcatttatgggtgtaac 50743708  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 50743887 - 50743812
Alignment:
Q  151 catgaattgaaatgagggaaaaaacataaatgaatcaagaacacaattttctaaccttccttatttcaaaattgctt 227  Q
    |||||||||||||||||||||||| | |||  |||||| ||||||||||||||| |||  || ||||||||||||||    
T  50743887 catgaattgaaatgagggaaaaaaaaaaaacaaatcaa-aacacaattttctaatcttggttgtttcaaaattgctt 50743812  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 55678967 - 55678896
Alignment:
Q  270 gattgcaaaggttttggatgaaattggaaataaaattttatttaagggtgtttttgtcatttatggttgtaac 342  Q
    |||||||||| || ||| |||| |||| ||| |||||||||||||||||||| |||||||||| || ||||||    
T  55678967 gattgcaaagattctggttgaa-ttgggaattaaattttatttaagggtgttattgtcatttagggatgtaac 55678896  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 36011411 - 36011353
Alignment:
Q  275 caaaggttttggatgaaattggaaataaaatttta-tttaagggtgtttttgtcattta 332  Q
    ||||| |||||| ||||||||| ||| |||||||| ||||||||| |||||||||||||    
T  36011411 caaagattttgggtgaaattgggaattaaattttattttaagggtatttttgtcattta 36011353  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 3119303 - 3119379
Alignment:
Q  256 gaagaagagagaaagattgcaaaggttttggatgaaattggaaataaaattttatttaagggtgtttttgtcattta 332  Q
    ||||||||||||| ||||||||||||||| | ||||||||| ||| ||||||||| |||||||||||||||||||||    
T  3119303 gaagaagagagaacgattgcaaaggtttttggtgaaattgggaattaaattttatctaagggtgtttttgtcattta 3119379  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 3119147 - 3119219
Alignment:
Q  168 gaaaaaacataaatgaatcaagaacac--aattttctaaccttccttatttcaaaattgctttcaaatcttgc 238  Q
    |||||| |||||||||||||| || ||  |||||||||||||| ||| ||||||||||||| | |||||||||    
T  3119147 gaaaaaccataaatgaatcaaaaaaacccaattttctaaccttgcttgtttcaaaattgctatgaaatcttgc 3119219  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 32902311 - 32902224
Alignment:
Q  153 tgaattgaaatgagggaaaaaa--cataaatgaatcaagaacacaattttctaaccttccttatttcaaaattgctttcaaatcttgc 238  Q
    |||| ||||||||||||||| |  ||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||  |||||||||    
T  32902311 tgaaatgaaatgagggaaaataatcataaatgaattaagagcacaattttctaaccttgcttgtttcaaaattgcttcgaaatcttgc 32902224  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 33420896 - 33420817
Alignment:
Q  262 gagagaaagattgcaaaggttttggatgaaattggaaataaaattttatttaagggtgtttttgtcatttatggttgtaac 342  Q
    ||||||| ||| |||||| |||| | |||||| |||| |||||||| ||||||||||||| ||||||||||||| ||||||    
T  33420896 gagagaacgatagcaaagattttaggtgaaatgggaattaaaattt-atttaagggtgttattgtcatttatgggtgtaac 33420817  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 19340822 - 19340864
Alignment:
Q  69 atgtgaccaaatgcaatgtgtttggtcctgtgaccaactaagaa 112  Q
    |||||||||||||||||||| |||||| ||||||||||||||||    
T  19340822 atgtgaccaaatgcaatgtg-ttggtcatgtgaccaactaagaa 19340864  T

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