View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17924_low_9 (Length: 489)
Name: NF17924_low_9
Description: NF17924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17924_low_9 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 44944496 - 44944003
Alignment:
| Q |
1 |
ccctagttatcttttatgtgtatcctaaatgttaattgcaagagataacatagcgacaattcacgaatggctatttaacactgcaaatattttcttaatt |
100 |
Q |
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| T |
44944496 |
ccctagttatcttttatgtgtatcctaaatgttaattgcaagagataacatagcgacaattcacgaatggctatttaacactgcaaatattttcttaatt |
44944397 |
T |
|
| Q |
101 |
ccatgcaataccctcccttgatctcctgcttgaacaactttgtattttcttaattccttagggacatattttatcgtgat----taatagcaatcctcnn |
196 |
Q |
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| T |
44944396 |
ccatgcaataccctcccttgatttccggcttgaacaactttatattttcttaattccttagggacatattttatcgtgattaattaatagcaatcctctt |
44944297 |
T |
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| Q |
197 |
nnnnnnnnnnnnnnnnnnatcatgattaatggcgctattattcataggtttctagtcattttatctcttatggattttggtttcttctgcttcttagg-- |
294 |
Q |
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| T |
44944296 |
tttttagttattttttttatcatgattaatggcgctattattcataggtttctagtcattttatctcttatggattttggtttcttctgcttcttaggtg |
44944197 |
T |
|
| Q |
295 |
--------tgtcatagacagtcatatggatgacttaaaataatgatcattttgtctacattgtgcatattgacttgtcatcgtgactattttgttttttc |
386 |
Q |
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| T |
44944196 |
tttggagttgtcatagacagtcatatggatgccttaaaataatgatcattttgtctacattgtgcatattgacttgtcatcgtgcctattttgttttttc |
44944097 |
T |
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| Q |
387 |
agtgatcaaaattttagatggataggatttagtgttctctagtatgatccacttaacattttaatttataatttcatcttcaggaaagtattat |
480 |
Q |
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| T |
44944096 |
agtgatcaaaattttagatggataggatttaatgttctctagtatgatccatttaacattttaatttataatttcatcttcaggaaagtattat |
44944003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 314 - 477
Target Start/End: Complemental strand, 44950086 - 44949923
Alignment:
| Q |
314 |
gatgacttaaaataatgatcattttgtctacattgtgcatattgacttgtcatcgtgactattttgttttttcagtgatcaaaattttagatggatag-g |
412 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||||| ||||||| || |||||||||||||||||||| | |
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| T |
44950086 |
gatgtcttaaaataatgatcattttgtctacattgt-cataatgacttgtcatagtgcctatttcattttttccatgttcaaaattttagatggatagtg |
44949988 |
T |
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| Q |
413 |
atttagtgttctctagtatgatccacttaacattttaatttataatttcatcttcaggaaagtat |
477 |
Q |
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| T |
44949987 |
ttcaaaggttctctattatgattgacttaacgttttaatttataatttcatcttcgggaaagtat |
44949923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 473
Target Start/End: Complemental strand, 6470926 - 6470769
Alignment:
| Q |
320 |
ttaaaataat-gatcattttgtctacattgtgcatattgacttgtcatcgtgactattttgttttttcagtgat-caaaattttagatggataggattta |
417 |
Q |
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| T |
6470926 |
ttaaaataattgatcattttgtgtacataatgcatattgacttgtcatagtgcctattttgttttttccatgttccaaaatttgagacggatagggttga |
6470827 |
T |
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| Q |
418 |
gtg-ttctctagta-tgatccacttaacattttaatttataatttcatcttcaggaaa |
473 |
Q |
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| T |
6470826 |
aagattctttattattgattcactcaccattttaatttataacttcattttcaggaaa |
6470769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 29818724 - 29818632
Alignment:
| Q |
41 |
agagataacatagcga-caattcacgaatggctatttaacactgcaaatattttcttaattccatgcaataccctcccttgatctcctgcttgaacaa |
137 |
Q |
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| T |
29818724 |
agagataacatagcaaacaattcacgaatggctatttaacact-----tattttattaatgccatacaatgccctcccttgttttccagctggaacaa |
29818632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 47539483 - 47539584
Alignment:
| Q |
41 |
agagataacatagcga-caattcacgaatggctatttaacactgcaaatattttcttaattccatgcaataccctcccttgatctcctgcttgaacaact |
139 |
Q |
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|||||||||||||||| ||||||||| |||| ||||||||||| | ||||||||||||| | || |||| ||||||||| | ||| || |||||||| |
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| T |
47539483 |
agagataacatagcgaacaattcacggatggttatttaacacttaagatattttcttaatgcaatacaatgtcctcccttgttttccggcaggaacaact |
47539582 |
T |
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| Q |
140 |
tt |
141 |
Q |
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|| |
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| T |
47539583 |
tt |
47539584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 480
Target Start/End: Original strand, 418925 - 418964
Alignment:
| Q |
441 |
aacattttaatttataatttcatcttcaggaaagtattat |
480 |
Q |
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| T |
418925 |
aacattttaatttataatttcattttcaggaaaatattat |
418964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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