View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17925_high_12 (Length: 355)
Name: NF17925_high_12
Description: NF17925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17925_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 24 - 334
Target Start/End: Original strand, 4105780 - 4106090
Alignment:
| Q |
24 |
caacaacctcgtactagcaccaacaggatcacaggttcagctaacatcaggtggactcacgttgacaaatccacaaaatgaatccatttggacagcacaa |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4105780 |
caacaacctcgtactagcaccaacaggatcacaggttcagctaacatcaggtggactcacgttgacaaatccacaaaatgaatccatttggacagcacaa |
4105879 |
T |
|
| Q |
124 |
ccaaacgatattgtttcctatggaaccatgcttgataatggaaactttgttcttgtaaacaacaaatctgctattgtttgggaaagttttaagtttccta |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4105880 |
ccaaacgatattgtttcctatggaaccatgcttgataatggaaactttgttcttgtaaacaacaaatctgctattgtttgggaaagttttaagtttccta |
4105979 |
T |
|
| Q |
224 |
ctgatacccttttgcctaatcaatcacttgagttaggtgccaccttaacttcaagattctcagagaccaatttcacaagtggaaggttccaactttattt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4105980 |
ctgatacccttttgcctaatcaatcacttgagttaggtgccaccttaacttcaagattctcagagaccaatttcacaagtggaaggttccaactttattt |
4106079 |
T |
|
| Q |
324 |
taatgatgatg |
334 |
Q |
| |
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||||||||||| |
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| T |
4106080 |
taatgatgatg |
4106090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 24 - 334
Target Start/End: Original strand, 4128970 - 4129280
Alignment:
| Q |
24 |
caacaacctcgtactagcaccaacaggatcacaggttcagctaacatcaggtggactcacgttgacaaatccacaaaatgaatccatttggacagcacaa |
123 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||||| || |||| |||||||||||||||||||||| |
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| T |
4128970 |
caacaacctcgtacaagcaccgacaggatcacaagttcagctaacatcaggaggactcacgttgacaactcaacaaggtgaatccatttggacagcacaa |
4129069 |
T |
|
| Q |
124 |
ccaaacgatattgtttcctatggaaccatgcttgataatggaaactttgttcttgtaaacaacaaatctgctattgtttgggaaagttttaagtttccta |
223 |
Q |
| |
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|||||| |||||||||||||| ||||| ||||| |||||||||||||||||| || || || ||| ||||||||||||||||||| |||||||| | |
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| T |
4129070 |
ccaaacacagctgtttcctatggaatcatgcatgatactggaaactttgttcttgttaataagaattcttctattgtttgggaaagtttcaagtttccca |
4129169 |
T |
|
| Q |
224 |
ctgatacccttttgcctaatcaatcacttgagttaggtgccaccttaacttcaagattctcagagaccaatttcacaagtggaaggttccaactttattt |
323 |
Q |
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| || |||||||||||||||||||| ||||| ||||||| | | ||||||| ||||| ||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
4129170 |
ccgacacccttttgcctaatcaatctcttgaattaggtggaaacataacttctagattttcagagaccaactacacaagtgggaggttccaactttattt |
4129269 |
T |
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| Q |
324 |
taatgatgatg |
334 |
Q |
| |
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| |||||||| |
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|
| T |
4129270 |
tcgtgatgatg |
4129280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 4100602 - 4100634
Alignment:
| Q |
307 |
aggttccaactttattttaatgatgatgtccat |
339 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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| T |
4100602 |
aggttccaactttattttaatgatgatgaccat |
4100634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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