View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17925_high_17 (Length: 336)

Name: NF17925_high_17
Description: NF17925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17925_high_17
NF17925_high_17
[»] chr3 (8 HSPs)
chr3 (1-136)||(21966614-21966748)
chr3 (5-136)||(21966963-21967094)
chr3 (1-136)||(21989050-21989184)
chr3 (5-136)||(21989399-21989530)
chr3 (219-327)||(24047127-24047237)
chr3 (219-327)||(23674851-23674961)
chr3 (219-327)||(23679356-23679466)
chr3 (219-327)||(24051593-24051703)
[»] chr6 (2 HSPs)
chr6 (5-136)||(20487184-20487315)
chr6 (5-136)||(20481688-20481819)
[»] chr8 (3 HSPs)
chr8 (219-327)||(24859182-24859292)
chr8 (10-136)||(24858989-24859115)
chr8 (5-136)||(24860149-24860280)
[»] chr5 (2 HSPs)
chr5 (219-327)||(27205727-27205837)
chr5 (223-327)||(27210192-27210298)
[»] chr4 (2 HSPs)
chr4 (219-327)||(26897314-26897424)
chr4 (219-327)||(26901776-26901886)
[»] chr1 (2 HSPs)
chr1 (219-327)||(26406737-26406847)
chr1 (219-327)||(26411203-26411313)


Alignment Details
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 21966748 - 21966614
Alignment:
Q  1 gcgaccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21966748 gcgaccataagcgccacatcagcgaccatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaa 21966650  T
Q  101 ggaccaaaatgaaactaaaattaattaagggaccaa 136  Q
    |||||||||||||||||||||||||||| |||||||    
T  21966649 ggaccaaaatgaaactaaaattaattaaaggaccaa 21966614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 21966963 - 21967094
Alignment:
Q  5 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 104  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21966963 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 21967062  T
Q  105 caaaatgaaactaaaattaattaagggaccaa 136  Q
    |||||||||||| |||||||||||||||||||    
T  21967063 caaaatgaaacttaaattaattaagggaccaa 21967094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 21989184 - 21989050
Alignment:
Q  1 gcgaccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21989184 gcgaccataagcgccacatcagcgaccatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaa 21989086  T
Q  101 ggaccaaaatgaaactaaaattaattaagggaccaa 136  Q
    |||||||||||||||||||||||||||| |||||||    
T  21989085 ggaccaaaatgaaactaaaattaattaaaggaccaa 21989050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 21989399 - 21989530
Alignment:
Q  5 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 104  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21989399 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 21989498  T
Q  105 caaaatgaaactaaaattaattaagggaccaa 136  Q
    |||||||||||| |||||||||||||||||||    
T  21989499 caaaatgaaacttaaattaattaagggaccaa 21989530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 24047127 - 24047237
Alignment:
Q  219 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 316  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  24047127 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgc 24047226  T
Q  317 aacagtataat 327  Q
    |||||||||||    
T  24047227 aacagtataat 24047237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 23674851 - 23674961
Alignment:
Q  219 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 316  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||    
T  23674851 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgc 23674950  T
Q  317 aacagtataat 327  Q
    |||||||||||    
T  23674951 aacagtataat 23674961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 23679356 - 23679466
Alignment:
Q  219 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 316  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||    
T  23679356 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgc 23679455  T
Q  317 aacagtataat 327  Q
    |||||||||||    
T  23679456 aacagtataat 23679466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 24051593 - 24051703
Alignment:
Q  219 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 316  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||    
T  24051593 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgc 24051692  T
Q  317 aacagtataat 327  Q
    |||||||||||    
T  24051693 aacagtataat 24051703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 20487184 - 20487315
Alignment:
Q  5 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 104  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  20487184 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaaagtttgacggaaaggacataaacgatggacggatcttaattaaaggac 20487283  T
Q  105 caaaatgaaactaaaattaattaagggaccaa 136  Q
    |||||||| |||||||||||||||||||||||    
T  20487284 caaaatgagactaaaattaattaagggaccaa 20487315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 20481819 - 20481688
Alignment:
Q  5 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 104  Q
    ||||||||||||||||| | ||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  20481819 ccataagcgccacatcagcaaccatgtgtgagacttagcgtttcttaattaaagtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 20481720  T
Q  105 caaaatgaaactaaaattaattaagggaccaa 136  Q
    |||||||| ||||||||||| |||||||||||    
T  20481719 caaaatgagactaaaattaaataagggaccaa 20481688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 24859182 - 24859292
Alignment:
Q  219 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 316  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24859182 aagcagtatgcggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 24859281  T
Q  317 aacagtataat 327  Q
    |||||||||||    
T  24859282 aacagtataat 24859292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 24859115 - 24858989
Alignment:
Q  10 agcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaa 109  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||| ||| ||| |||| ||| |||||||||||| | |||||||||||||||||||    
T  24859115 agcgccacatcagcgcccatgtgtgagacttaacatttcttaataaatttttaacggaaagaacaaaaacgatggacggagcttaattaaaggaccaaaa 24859016  T
Q  110 tgaaactaaaattaattaagggaccaa 136  Q
    |||| |||||| |||||||||||||||    
T  24859015 tgaacctaaaaataattaagggaccaa 24858989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 24860149 - 24860280
Alignment:
Q  5 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 104  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||  ||||||  ||||||| ||||| ||||||||||||||| | ||||||||||||||    
T  24860149 ccataagcgccacatcagcgaccatatgtgagacttaacgtttcaaaattaaaatttgacggaaagggcataaacgatggacggagcttaattaaaggac 24860248  T
Q  105 caaaatgaaactaaaattaattaagggaccaa 136  Q
    ||||||||  |||||| |||||||||||||||    
T  24860249 caaaatgagtctaaaaataattaagggaccaa 24860280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 27205837 - 27205727
Alignment:
Q  219 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 316  Q
    |||||||||| ||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27205837 aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 27205738  T
Q  317 aacagtataat 327  Q
    |||||||||||    
T  27205737 aacagtataat 27205727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 223 - 327
Target Start/End: Complemental strand, 27210298 - 27210192
Alignment:
Q  223 agtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaaca 320  Q
    |||||| ||||||||||||||  | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27210298 agtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaata 27210199  T
Q  321 gtataat 327  Q
    |||||||    
T  27210198 gtataat 27210192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 26897424 - 26897314
Alignment:
Q  219 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 316  Q
    |||||||||| ||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26897424 aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 26897325  T
Q  317 aacagtataat 327  Q
    |||||||||||    
T  26897324 aacagtataat 26897314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 26901886 - 26901776
Alignment:
Q  219 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 316  Q
    |||||||||| ||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26901886 aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 26901787  T
Q  317 aacagtataat 327  Q
    |||||||||||    
T  26901786 aacagtataat 26901776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 26406737 - 26406847
Alignment:
Q  219 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 316  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  26406737 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgc 26406836  T
Q  317 aacagtataat 327  Q
    |||||||||||    
T  26406837 aacagtataat 26406847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 26411203 - 26411313
Alignment:
Q  219 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 316  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  26411203 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgc 26411302  T
Q  317 aacagtataat 327  Q
    |||||||||||    
T  26411303 aacagtataat 26411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University