View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17925_high_18 (Length: 330)

Name: NF17925_high_18
Description: NF17925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17925_high_18
NF17925_high_18
[»] chr6 (16 HSPs)
chr6 (32-275)||(19704920-19705163)
chr6 (32-275)||(18317753-18317994)
chr6 (76-275)||(2629278-2629477)
chr6 (76-275)||(5275727-5275926)
chr6 (76-275)||(12195903-12196102)
chr6 (32-275)||(30034953-30035194)
chr6 (76-275)||(26932957-26933156)
chr6 (76-275)||(30966925-30967124)
chr6 (80-275)||(17011781-17011973)
chr6 (80-269)||(17852275-17852463)
chr6 (32-275)||(22858300-22858534)
chr6 (111-275)||(20526548-20526708)
chr6 (111-197)||(30445318-30445404)
chr6 (111-197)||(30443111-30443195)
chr6 (220-263)||(12158532-12158575)
chr6 (222-267)||(30443022-30443069)
[»] chr1 (36 HSPs)
chr1 (32-309)||(31735873-31736147)
chr1 (77-309)||(27337332-27337564)
chr1 (76-275)||(15295238-15295437)
chr1 (76-275)||(47905958-47906157)
chr1 (32-275)||(17324984-17325225)
chr1 (76-275)||(24325349-24325548)
chr1 (32-275)||(39931764-39932004)
chr1 (79-275)||(48664854-48665050)
chr1 (76-275)||(9463639-9463838)
chr1 (79-272)||(2949617-2949810)
chr1 (32-245)||(21948539-21948751)
chr1 (76-275)||(9459812-9460011)
chr1 (32-275)||(27339482-27339728)
chr1 (92-275)||(6115532-6115716)
chr1 (76-275)||(28998643-28998842)
chr1 (76-275)||(29004359-29004558)
chr1 (87-275)||(45693834-45694022)
chr1 (85-275)||(4131690-4131880)
chr1 (89-309)||(6997182-6997395)
chr1 (79-239)||(6996067-6996221)
chr1 (76-165)||(46432118-46432207)
chr1 (162-275)||(46432521-46432634)
chr1 (124-275)||(16561133-16561284)
chr1 (111-197)||(11693580-11693666)
chr1 (76-155)||(2510722-2510801)
chr1 (111-197)||(13785662-13785748)
chr1 (111-194)||(14352759-14352842)
chr1 (32-143)||(26520465-26520580)
chr1 (76-138)||(6115479-6115541)
chr1 (111-194)||(10115572-10115653)
chr1 (147-197)||(32260833-32260883)
chr1 (218-267)||(32260746-32260795)
chr1 (158-204)||(13112047-13112093)
chr1 (220-267)||(11693706-11693753)
chr1 (218-267)||(13785786-13785835)
chr1 (227-267)||(10115466-10115506)
[»] chr5 (24 HSPs)
chr5 (32-311)||(27912185-27912463)
chr5 (76-309)||(18468666-18468899)
chr5 (32-275)||(25803709-25803949)
chr5 (76-309)||(18509706-18509939)
chr5 (32-277)||(18511560-18511802)
chr5 (76-309)||(26098640-26098873)
chr5 (76-281)||(27910131-27910336)
chr5 (32-275)||(3373387-3373628)
chr5 (76-275)||(15551927-15552126)
chr5 (32-257)||(10586549-10586772)
chr5 (32-275)||(26097423-26097666)
chr5 (32-275)||(18596328-18596580)
chr5 (94-275)||(21288531-21288713)
chr5 (76-197)||(18466453-18466574)
chr5 (125-270)||(17415748-17415893)
chr5 (79-197)||(15143262-15143373)
chr5 (173-275)||(6661929-6662031)
chr5 (76-144)||(40221340-40221408)
chr5 (218-275)||(40221284-40221341)
chr5 (223-275)||(18466413-18466465)
chr5 (223-272)||(15143225-15143274)
chr5 (111-153)||(6661594-6661636)
chr5 (218-267)||(5779168-5779217)
chr5 (124-197)||(32520241-32520316)
[»] chr4 (28 HSPs)
chr4 (32-311)||(22132745-22133021)
chr4 (32-311)||(14787779-14788055)
chr4 (76-309)||(5100711-5100944)
chr4 (32-275)||(22134976-22135217)
chr4 (76-275)||(56030191-56030390)
chr4 (76-275)||(24347961-24348159)
chr4 (76-275)||(44600227-44600426)
chr4 (76-275)||(17662625-17662824)
chr4 (32-261)||(30136331-30136558)
chr4 (127-275)||(47211158-47211306)
chr4 (36-275)||(38890478-38890699)
chr4 (111-275)||(10112628-10112787)
chr4 (32-170)||(19322547-19322685)
chr4 (111-275)||(9022062-9022225)
chr4 (123-275)||(9863501-9863650)
chr4 (111-197)||(54929094-54929180)
chr4 (118-197)||(10979676-10979755)
chr4 (76-146)||(53405001-53405071)
chr4 (218-275)||(14789512-14789569)
chr4 (176-275)||(19322410-19322510)
chr4 (111-267)||(38209098-38209259)
chr4 (135-194)||(29609838-29609897)
chr4 (146-197)||(5516701-5516752)
chr4 (158-197)||(14647175-14647214)
chr4 (228-263)||(29609948-29609983)
chr4 (218-267)||(54929220-54929267)
chr4 (253-309)||(16455017-16455074)
chr4 (221-261)||(5516793-5516833)
[»] chr7 (40 HSPs)
chr7 (76-309)||(20299123-20299356)
chr7 (76-309)||(7092567-7092800)
chr7 (76-309)||(28487217-28487450)
chr7 (76-309)||(31156299-31156532)
chr7 (76-309)||(38395954-38396187)
chr7 (76-275)||(1849667-1849866)
chr7 (32-275)||(7094772-7095013)
chr7 (32-309)||(7349625-7349899)
chr7 (76-309)||(7470420-7470653)
chr7 (76-275)||(1606173-1606372)
chr7 (32-275)||(3035417-3035660)
chr7 (32-275)||(11756927-11757167)
chr7 (32-272)||(20625739-20625977)
chr7 (32-272)||(20629630-20629868)
chr7 (32-272)||(20642049-20642287)
chr7 (77-275)||(47865330-47865528)
chr7 (32-275)||(7472330-7472572)
chr7 (76-275)||(28485263-28485462)
chr7 (32-275)||(7352004-7352244)
chr7 (32-275)||(18345239-18345480)
chr7 (32-275)||(37412474-37412714)
chr7 (76-269)||(24258166-24258358)
chr7 (76-275)||(21470682-21470881)
chr7 (32-275)||(21989855-21990094)
chr7 (76-275)||(42331392-42331591)
chr7 (78-275)||(38393685-38393882)
chr7 (32-205)||(13099822-13099993)
chr7 (76-197)||(43253914-43254035)
chr7 (32-275)||(3676999-3677223)
chr7 (129-275)||(443328-443474)
chr7 (32-173)||(20297163-20297301)
chr7 (111-274)||(40281824-40281989)
chr7 (111-197)||(12310442-12310528)
chr7 (218-267)||(20297108-20297157)
chr7 (219-267)||(10690684-10690732)
chr7 (150-197)||(12484976-12485023)
chr7 (150-197)||(12506407-12506454)
chr7 (223-269)||(43254023-43254069)
chr7 (102-183)||(10690773-10690854)
chr7 (150-197)||(12657600-12657647)
[»] chr2 (18 HSPs)
chr2 (76-309)||(35215983-35216216)
chr2 (76-275)||(42452451-42452650)
chr2 (76-275)||(23452628-23452827)
chr2 (76-275)||(35218364-35218563)
chr2 (76-275)||(42923893-42924092)
chr2 (32-275)||(27583671-27583905)
chr2 (111-267)||(28568584-28568740)
chr2 (111-197)||(15693669-15693755)
chr2 (147-275)||(27136367-27136503)
chr2 (182-270)||(34575608-34575696)
chr2 (111-196)||(7502638-7502723)
chr2 (126-197)||(39286971-39287042)
chr2 (118-197)||(41304806-41304884)
chr2 (76-172)||(34575528-34575617)
chr2 (119-197)||(41303457-41303535)
chr2 (218-267)||(28568346-28568395)
chr2 (221-267)||(15693583-15693629)
chr2 (218-267)||(41303573-41303623)
[»] scaffold0511 (1 HSPs)
scaffold0511 (32-275)||(1737-1978)
[»] chr3 (23 HSPs)
chr3 (32-309)||(457918-458193)
chr3 (76-275)||(4104282-4104481)
chr3 (76-311)||(42991919-42992154)
chr3 (32-311)||(53915840-53916116)
chr3 (32-275)||(746424-746664)
chr3 (32-275)||(25533109-25533347)
chr3 (27-275)||(51943044-51943289)
chr3 (32-275)||(10621886-10622125)
chr3 (76-275)||(455575-455774)
chr3 (32-275)||(1313084-1313323)
chr3 (32-275)||(27635972-27636210)
chr3 (80-275)||(41848806-41849001)
chr3 (76-275)||(42989954-42990153)
chr3 (32-272)||(53918008-53918245)
chr3 (111-194)||(11066346-11066429)
chr3 (218-275)||(6561615-6561672)
chr3 (122-194)||(54287487-54287559)
chr3 (127-192)||(53974011-53974077)
chr3 (127-197)||(11072731-11072801)
chr3 (218-267)||(53974148-53974197)
chr3 (32-67)||(6561689-6561724)
chr3 (221-267)||(11072644-11072690)
chr3 (150-197)||(5535882-5535929)
[»] scaffold0005 (3 HSPs)
scaffold0005 (32-311)||(51675-51951)
scaffold0005 (218-275)||(50161-50218)
scaffold0005 (158-197)||(170076-170115)
[»] chr8 (15 HSPs)
chr8 (32-275)||(608472-608716)
chr8 (32-311)||(41384459-41384734)
chr8 (32-272)||(15808967-15809204)
chr8 (32-275)||(28283571-28283811)
chr8 (76-275)||(43529873-43530072)
chr8 (76-275)||(3873752-3873952)
chr8 (32-275)||(41382421-41382662)
chr8 (119-275)||(32339096-32339252)
chr8 (160-275)||(3265635-3265750)
chr8 (32-126)||(181434-181526)
chr8 (111-197)||(11701364-11701447)
chr8 (123-194)||(13986214-13986285)
chr8 (221-267)||(13986328-13986374)
chr8 (223-267)||(11701435-11701479)
chr8 (218-267)||(30679208-30679256)
[»] scaffold0154 (1 HSPs)
scaffold0154 (32-275)||(11819-12059)
[»] scaffold0031 (1 HSPs)
scaffold0031 (32-275)||(78885-79127)
[»] scaffold0133 (2 HSPs)
scaffold0133 (129-282)||(4541-4694)
scaffold0133 (32-67)||(4722-4757)
[»] scaffold1674 (1 HSPs)
scaffold1674 (183-309)||(1-127)
[»] scaffold0468 (2 HSPs)
scaffold0468 (162-275)||(2070-2183)
scaffold0468 (76-134)||(2022-2080)
[»] scaffold0008 (1 HSPs)
scaffold0008 (124-194)||(57836-57905)
[»] scaffold0533 (1 HSPs)
scaffold0533 (126-173)||(1971-2018)
[»] scaffold0474 (1 HSPs)
scaffold0474 (218-267)||(10443-10492)
[»] scaffold0011 (1 HSPs)
scaffold0011 (279-311)||(35547-35579)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 19704920 - 19705163
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||||||||||||||| ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19704920 aaatttggaacgaatatcacacttaagatacgtttcttttttttctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 19705019  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  19705020 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgaaacaaatcttttatattttt 19705119  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19705120 agcaacaatattcttcttccatcaaattttgagtcatactacaa 19705163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 18317994 - 18317753
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18317994 aaatttggaacgaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 18317897  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  18317896 tttgcatcaaatcttccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 18317797  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  18317796 agcaacaatattcttcttccttcaaattttgagtcatactacaa 18317753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 2629278 - 2629477
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2629278 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 2629377  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2629378 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 2629477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 5275727 - 5275926
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5275727 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 5275826  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  5275827 gtccataaatatattttcagcacaaaatatatttgaaataaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 5275926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 12195903 - 12196102
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12195903 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 12196002  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||||||| |||| ||||       |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  12196003 gtccataaatatattttcagcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaa 12196102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 30034953 - 30035194
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| ||||||||| |||||||||||||         |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  30034953 aaatttggaacaaatatcacattgaagatacgttt--ttattttctccttcagtgaaagaatatctgcatcaaaaatataatattccctttcaaaatata 30035050  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||       ||||||||||||||    
T  30035051 tttgcattaaatcgttcttcatacgatacaaaaatatatttattgtctataaatatatttttagcacaaaatatatttgaaacaaatcttttatattttt 30035150  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  30035151 agcaacaatattctccatccatcaaattttgagtcatactacaa 30035194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 26932957 - 26933156
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26932957 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 26933056  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||  ||||||||||||||| |||| ||||       |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  26933057 gtccataataatattttcagcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaa 26933156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 30967124 - 30966925
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||    
T  30967124 ctccttcagtgaaagaatatttgcatcaaaaatataatattcgctttcaaaatatatttgcattaaatcgttcttcatacaatacaaaaatatatttatt 30967025  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  30967024 gtccataaatatattttcagcacaaaatatatttgaaataaatcttttatatttttagcaacaatattctccatccatcaaatttggagtcatactacaa 30966925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 80 - 275
Target Start/End: Complemental strand, 17011973 - 17011781
Alignment:
Q  80 ttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtcc 179  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  17011973 ttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccatcatacggtacaaaaatatatttattgtcc 17011874  T
Q  180 ataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||  |||||||||   ||         |||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  17011873 ataaatatattttctacacaaaata---tttaaaacaaacttttatatttttagcaataatattcttcatccatcaaattttaagtcatactacaa 17011781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 80 - 269
Target Start/End: Complemental strand, 17852463 - 17852275
Alignment:
Q  80 ttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtcc 179  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||    
T  17852463 ttcagtgaaataatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatagttcttcataaggtacaaaaatatatttattgtcc 17852364  T
Q  180 ataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagca--acaatattcttcttccatcaaattttgagtcata 269  Q
    |||||||||||||||||| ||||||  ||||       ||||||||||||||||||  |||||||||| | | |||||||||||||||||||    
T  17852363 ataaatatattttcagcataaaata--tttgaaacaaatcttttatatttttagcaacacaatattctccat-catcaaattttgagtcata 17852275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 22858300 - 22858534
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||| |||||||  ||||||||||||||        |||||||| ||||||||||||||||| ||||        |||||||||||||||||    
T  22858300 aaatttggaacgtatatcacgttgaagatacgtttcttttttt-ctccttcaatgaaagaatatttgcatcaaaa--------ttccctttcaaaatata 22858390  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    |||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||        ||||||||||||||    
T  22858391 tttgcatctaatcttctttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaagtatatttaaaacaaatcttttatattttt 22858490  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |  ||||||||||||| |||||||||||||||||||||||||||    
T  22858491 attaacaatattcttcatccatcaaattttgagtcatactacaa 22858534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 275
Target Start/End: Complemental strand, 20526708 - 20526548
Alignment:
Q  111 aatattccctttcaaaa-tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatcttt 209  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| ||     ||||||||||||||||||| ||||||| |||    
T  20526708 aatattctctttcaaaaatatatttgcatcaaatcttccttcatacggtacaaaaatatatgta-----cataaatatattttcagcataaaatatattt 20526614  T
Q  210 gnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |       ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  20526613 gaaacaaatcttttatatttttagcaacaatattcttcacccatcaaattttgagtcatactacaa 20526548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 30445404 - 30445318
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||    
T  30445404 aatattcctttttaaaatatatttgcatcaaatcttccttcatatggtacaaaaatatatttattgttcataaatatattttcagca 30445318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 30443195 - 30443111
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||| | ||| |||||| |||||||||||||| ||||| ||||| |||||| |||||||  ||||||||||||||||||||||||    
T  30443195 aatatttcttttaaaaatacatttgcatcaaatcttcctttatacggtacaaacatatatt--ttgtccataaatatattttcagca 30443111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 12158575 - 12158532
Alignment:
Q  220 ttttatatttttagcaacaatattcttcttccatcaaattttga 263  Q
    ||||||||||||||||||||| |||||| | |||||||||||||    
T  12158575 ttttatatttttagcaacaatcttcttcattcatcaaattttga 12158532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 30443069 - 30443022
Alignment:
Q  222 ttatatttttagcaacaatattcttcttccatc--aaattttgagtca 267  Q
    ||||||||||| |||||||||||||| ||||||  |||||||||||||    
T  30443069 ttatatttttaacaacaatattcttcatccatcataaattttgagtca 30443022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 32 - 309
Target Start/End: Original strand, 31735873 - 31736147
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31735873 aaatttggaacaaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 31735969  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  31735970 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 31736069  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattagtgatgatg 309  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||    
T  31736070 agcaacaatattctccttccatcaaattttgagtcatactacaacattctccaccttgactctaaattagtgatgatg 31736147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 77 - 309
Target Start/End: Original strand, 27337332 - 27337564
Alignment:
Q  77 tccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattg 176  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27337332 tccttcagttaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattg 27337431  T
Q  177 tccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaaa 276  Q
    ||||||||||||||||||||||||||||| ||||       |||| ||||||||||||||||||||||  | |||||||||||| ||||||||||||||     
T  27337432 tccataaatatattttcagcacaaaatatatttgaaacaaatcttatatatttttagcaacaatattccccatccatcaaatttggagtcatactacaac 27337531  T
Q  277 attctcaaccttgactccaaattagtgatgatg 309  Q
    |||||| |||||||||| |||||||||||||||    
T  27337532 attctccaccttgactctaaattagtgatgatg 27337564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 15295238 - 15295437
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15295238 ctccttcagtgaaagaatatttgcatcaaaaatataatattcgctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 15295337  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15295338 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 15295437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 47906157 - 47905958
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47906157 ctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 47906058  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  47906057 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 47905958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 17324984 - 17325225
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||||||| ||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17324984 aaatttggaacgaatatcaccctgaagatacgttt--tttttttctccttcagtgaaagaatatttgcataaaaaatataatattcccttgcaaaatata 17325081  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||||       ||||||||||||||    
T  17325082 tttgcatcaaatcgtttttcatacggtacaaaaatatatttattgtccataaatatattttcaactcaaaatatatttgaaacaaatcttttatattttt 17325181  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  17325182 agcaacaatattctccatccatcaaattttgagtcatactacaa 17325225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 24325548 - 24325349
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24325548 ctccttcagtgaaagaatatttgcatcaaaaatataatattcactttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 24325449  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||||||| |||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  24325448 gtccataaatatattttcagcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 24325349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 39932004 - 39931764
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||||||||  |||||||||||||||||         |||||||| | ||||||||||||||| |||| ||||||||||||||||||||||||    
T  39932004 aaatttggaacgaatactacactgaagatacgttt---ttttttctccttcaataaaagaatatttgcatcaaaagtataatattccctttcaaaatata 39931908  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  39931907 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 39931808  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  39931807 agcaacaatattctccatccatcaaattttgagtcatactacaa 39931764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 79 - 275
Target Start/End: Complemental strand, 48665050 - 48664854
Alignment:
Q  79 cttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtc 178  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||    
T  48665050 cttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatgtgcatcaaatcgttcttcatacggtacaaaaatatatttattgtc 48664951  T
Q  179 cataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  48664950 cataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 48664854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 9463639 - 9463838
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||    
T  9463639 ctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcattaaattgttcttcatacgatataaaaatatatttatt 9463738  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  9463739 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 9463838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 79 - 272
Target Start/End: Original strand, 2949617 - 2949810
Alignment:
Q  79 cttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtc 178  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||    
T  2949617 cttcagtgaaagaatatttgtatcaaaaatataatattccctttcaaaatatatttgcatcaaatcattcttcatacaatacaaaaatatatttattgtc 2949716  T
Q  179 cataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatacta 272  Q
    ||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  2949717 cataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatgaaattttgagtcatacta 2949810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 32 - 245
Target Start/End: Original strand, 21948539 - 21948751
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  21948539 aaatttggaacgaataccacactgaagatacgttt-tttttttcctccttctgtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 21948637  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  21948638 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 21948737  T
Q  232 agcaacaatattct 245  Q
    ||||||||||||||    
T  21948738 agcaacaatattct 21948751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 9459812 - 9460011
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||| || |||||||||||||||    
T  9459812 ctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcattaaattgttcttcatacggtataaaaatatatttatt 9459911  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  9459912 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 9460011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 27339482 - 27339728
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||| |         ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27339482 aaatttggaacaaataccacactgaagatacgtt-cttttttttttccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 27339580  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataa----atatattttcagcacaaaatatctttgnnnnnnntcttttatat 227  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||||       ||||||||||    
T  27339581 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatatatattttcagcacaaaatatatttgaaacaaatcttttatat 27339680  T
Q  228 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||| | ||| |||||||| ||||||||||||||    
T  27339681 ttttagcaacaatattctccatccgtcaaatttggagtcatactacaa 27339728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 92 - 275
Target Start/End: Original strand, 6115532 - 6115716
Alignment:
Q  92 atatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6115532 atatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtcattcatacgatacaaaaatatatttattgtccataaatatattt 6115631  T
Q  192 tcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaa-ttttgagtcatactacaa 275  Q
    |||||||||||||| ||||       |||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||    
T  6115632 tcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttttgagtcatcctacaa 6115716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 28998643 - 28998842
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||| |||| ||||||||| ||||||||    
T  28998643 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatatttcttcgtacggtacaaaaatgtatttatt 28998742  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| |||        ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||    
T  28998743 gtccataaatatattttcagcacaaaatatattttaaacaaatcttttatagttttagcaacaatattctccatccatcaaattttgagtcatactacaa 28998842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 29004359 - 29004558
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||| |||| ||||||||| ||||||||    
T  29004359 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatatttcttcgtacggtacaaaaatgtatttatt 29004458  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| |||        ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||    
T  29004459 gtccataaatatattttcagcacaaaatatattttaaacaaatcttttatagttttagcaacaatattctccatccatcaaattttgagtcatactacaa 29004558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 87 - 275
Target Start/End: Original strand, 45693834 - 45694022
Alignment:
Q  87 aaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaata 186  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  45693834 aaagaatatttgcataaaaaatatattattctctttcaaaatatatttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaata 45693933  T
Q  187 tattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||| |||||||||||| ||||       |||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||||    
T  45693934 tatttttagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgaatcatagtacaa 45694022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 85 - 275
Target Start/End: Original strand, 4131690 - 4131880
Alignment:
Q  85 tgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatattta-ttgtccataa 183  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||    
T  4131690 tgaaagaatatttgcatcaaaa-tataatattccctttcaaaatatatttgcatcaaatcgttcttcatacggtacaaaaatatatttatttgtccataa 4131788  T
Q  184 atatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||| |||| |||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  4131789 atatatgttcaacacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 4131880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 309
Target Start/End: Complemental strand, 6997395 - 6997182
Alignment:
Q  89 agaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatata 188  Q
    ||||||||||||| ||||||||||||||| |||||||      ||||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||    
T  6997395 agaatatttgcatcaaaaatataatattctctttcaa------tttgcatcaaatcgttcttcatacggtataaaaatatatttattgtccataa-tata 6997303  T
Q  189 ttttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaacctt 288  Q
    |||| |||||||||||| ||||       ||||||||||||||||||| |||||||| | |||||||||||||||||||||||| || |||||| |||||    
T  6997302 tttttagcacaaaatatatttgaaacaaatcttttatatttttagcaataatattctccatccatcaaattttgagtcatactataacattctccacctt 6997203  T
Q  289 gactccaaattagtgatgatg 309  Q
    ||||| |||||||||||||||    
T  6997202 gactctaaattagtgatgatg 6997182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 6996221 - 6996067
Alignment:
Q  79 cttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtc 178  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||      ||| ||||||||||| ||||||||| ||||||||||||| |||||||    
T  6996221 cttcagtgaaagaatatttgcaacaaaaatataatattccctttcaa------tttacatcaaatcgttcttcatacggtacaaaaatatatgtattgtc 6996128  T
Q  179 cataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaa 239  Q
    ||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||    
T  6996127 cataaatatattttcagcacaaaatatatttgaaacaagtcttttatatttttagcaacaa 6996067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 46432118 - 46432207
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaa 165  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46432118 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaa 46432207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 46432521 - 46432634
Alignment:
Q  162 aaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaatttt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||    
T  46432521 aaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttt 46432620  T
Q  262 gagtcatactacaa 275  Q
    ||||||||||||||    
T  46432621 gagtcatactacaa 46432634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 124 - 275
Target Start/End: Complemental strand, 16561284 - 16561133
Alignment:
Q  124 aaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntctttt 223  Q
    ||||||||||||  ||||||  ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| ||||       | ||||    
T  16561284 aaaatatatttgtttcaaatattccttcatacggtacaaaaagatatttattgtcaataaatatattttcagcacaaaatatatttgaaacaaatatttt 16561185  T
Q  224 atatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||| ||||    
T  16561184 atatttttagcaacaatattcttcatccaacaaattttgaatcatacaacaa 16561133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 11693580 - 11693666
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11693580 aatattccctttaaaaatatatttgcatcaaatcttccttcatacggtacaaaaatatatttattgtccataaatatattttcagca 11693666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 2510722 - 2510801
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatac 155  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  2510722 ctccttcagtgaaagaatatttgcatcaaaaatataatattctctttcaaaatatatttgcatcaaatcgttcttcatac 2510801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 13785662 - 13785748
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||||    
T  13785662 aatattccttttaaaaatatatttgcatcaaatcttccttcatacgatacaaaaatatatttactatctataaatatattttcagca 13785748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 14352842 - 14352759
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 194  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| | | ||||||||||||||||    
T  14352842 aatattccctttaaaaatatatttgcatcaaatcttccttcatacggtacaaaaatatatttactattcataaatatattttca 14352759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 26520465 - 26520580
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnn----ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 127  Q
    ||||||||||||||||||||||||||||||| ||||            || |||| |||||||||||||||||| |||||||||||||||||||||||||    
T  26520465 aaatttggaacgaatatcacactgaagatacatttcttttgtttttttcttcttcggtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 26520564  T
Q  128 tatatttgcatcaaat 143  Q
    ||||||||||||||||    
T  26520565 tatatttgcatcaaat 26520580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 6115479 - 6115541
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcat 138  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6115479 ctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcat 6115541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 10115653 - 10115572
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 194  Q
    |||||||| ||| ||||||||||||||||||||  |||||||||||  | ||||  ||||||||||||||||||||||||||||    
T  10115653 aatattccgtttaaaaatatatttgcatcaaatattccttcatacgggataaaa--atatttattgtccataaatatattttca 10115572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 32260883 - 32260833
Alignment:
Q  147 ccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  32260883 ccttcatacggtacaaaaatatatttattgttcataaatatattttcagca 32260833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 32260795 - 32260746
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  32260795 tcttttatatttttagcaacaatcttcttcatccatcaaattttgagtca 32260746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 13112047 - 13112093
Alignment:
Q  158 tacaaaaatatatttattgtccataaatatattttcagcacaaaata 204  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||    
T  13112047 tacaaaaatatatttattgtccatgaatatattttcagcataaaata 13112093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 11693706 - 11693753
Alignment:
Q  220 ttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    ||||||| ||||||||| ||| |||||| |||||||||||||||||||    
T  11693706 ttttataattttagcaataatcttcttcatccatcaaattttgagtca 11693753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 13785786 - 13785835
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    ||||| ||||||||||| |||||||||| | |||||||| ||||||||||    
T  13785786 tctttcatatttttagcgacaatattctccatccatcaatttttgagtca 13785835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 10115506 - 10115466
Alignment:
Q  227 tttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    ||||| ||||||||||||||  |||||||||||||||||||    
T  10115506 ttttttgcaacaatattcttaatccatcaaattttgagtca 10115466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 32 - 311
Target Start/End: Complemental strand, 27912463 - 27912185
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27912463 aaatttggaacaaatatcacactgaagatacgttt-ttttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 27912365  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  27912364 tttgcatcaaatcgtttttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 27912265  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattagtgatgatgtc 311  Q
    |||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||    
T  27912264 agcaacaatattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattagtgatgatgtc 27912185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 76 - 309
Target Start/End: Complemental strand, 18468899 - 18468666
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18468899 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 18468800  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  18468799 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaaaaatattctccatccatcaaattttgagtcatactacaa 18468700  T
Q  276 aattctcaaccttgactccaaattagtgatgatg 309  Q
     |||||| |||||||||| |||||||||||||||    
T  18468699 cattctccaccttgactctaaattagtgatgatg 18468666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 25803949 - 25803709
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| ||||| |||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25803949 aaatttggaacaaatattacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 25803853  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  25803852 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 25803753  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  25803752 agcaacaatattctccatccatcaaattttgagtcatactacaa 25803709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 76 - 309
Target Start/End: Original strand, 18509706 - 18509939
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||    
T  18509706 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcattcttcatacggtacaaaaatatatttatt 18509805  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| || |       |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||     
T  18509806 gtccataaatatattttcagcacaaaatatattcgaaataaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacac 18509905  T
Q  276 aattctcaaccttgactccaaattagtgatgatg 309  Q
     |||||| |||||||||  |||||||||||||||    
T  18509906 cattctccaccttgactttaaattagtgatgatg 18509939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 32 - 277
Target Start/End: Original strand, 18511560 - 18511802
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| |||||| |||||||||||         |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  18511560 aaatttggaacgaataccacactaaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatatttcctttcaaaatata 18511656  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |       ||||||||||||||    
T  18511657 tttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatattcgaaacaaatcttttatattttt 18511756  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaaaa 277  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  18511757 agcaacaatattcttcatccatcaaattttgagtcatactacaaaa 18511802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 76 - 309
Target Start/End: Original strand, 26098640 - 26098873
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||| ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  26098640 ctccttcaatgaaagaatttttgtatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttctttatacggtacaaaaatatatttatt 26098739  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  26098740 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaataatattctccatccatcaaattttgagtcatactacaa 26098839  T
Q  276 aattctcaaccttgactccaaattagtgatgatg 309  Q
     |||||| |||||||||| |||||||||||||||    
T  26098840 cattctccaccttgactctaaattagtgatgatg 26098873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 76 - 281
Target Start/End: Complemental strand, 27910336 - 27910131
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  27910336 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacaatacaaaaatatatttatt 27910237  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  27910236 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaataatattctccatccatcaaattttgagtcatactacaa 27910137  T
Q  276 aattct 281  Q
     |||||    
T  27910136 cattct 27910131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 3373387 - 3373628
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  3373387 aaatttggaacaaataccacactgaagatacgttt--tttttttctccttcagtgaaaaaatatttgcatcaaaaatataatattccctttcaaaatata 3373484  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||       ||||||||||||||    
T  3373485 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaatatatatttgaaacaaatcttttatattttt 3373584  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | ||||||||||| |||||||||||||||    
T  3373585 agcaacaatattctccatccatcaaattctgagtcatactacaa 3373628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 15552126 - 15551927
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15552126 ctccttcagtgaaagaatatttgcatcaaaaatgtcatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 15552027  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| |||||||||| |||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  15552026 gtccataaatatatcttcagcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 15551927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 32 - 257
Target Start/End: Complemental strand, 10586772 - 10586549
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10586772 aaatttggaacaaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 10586675  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  10586674 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 10586575  T
Q  232 agcaacaatattcttcttccatcaaa 257  Q
    |||||||||||||  | |||||||||    
T  10586574 agcaacaatattccccatccatcaaa 10586549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 26097666 - 26097423
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctt--tcaaaata 129  Q
    |||||||||||||||| |||||||||||||| |||         |||||||||||||||||||||||||| |||||||||| ||| ||||  ||||||||    
T  26097666 aaatttggaacgaataccacactgaagatacattt--ttttttcctccttcagtgaaagaatatttgcatcaaaaatataacatttccttcttcaaaata 26097569  T
Q  130 tatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattt 229  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||       | ||||||||||    
T  26097568 tatttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttcagtacaaaatatatttgaaacaaattttttatattt 26097469  T
Q  230 ttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  26097468 ttagcaacaatattctccatccatcaaattttgagtcatactacaa 26097423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 18596580 - 18596328
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         |||||||||||| |||||||||| || ||||||||||||||| |||||||||||||    
T  18596580 aaatttggaacgaataccacactgaagatacgttt--tttttttctccttcagtgatagaatatttgtatcaaaaatataatattctctttcaaaatata 18596483  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatat-----------ttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntct 220  Q
    ||||||||||||||| ||| ||||| |||||||||||||           |||||||||||||||||||||||| |||||||||| ||||       |||    
T  18596482 tttgcatcaaatcgttctttatacggtacaaaaatatatttatggtatatttattgtccataaatatattttcaacacaaaatatatttgaaacaaatct 18596383  T
Q  221 tttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  18596382 tttatatttttagcaacaatattctccatccatcaaattttgagtcatagtacaa 18596328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 94 - 275
Target Start/End: Complemental strand, 21288713 - 21288531
Alignment:
Q  94 atttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgata-caaaaatatatttattgtccataaatatatttt 192  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || | |||||||||||||||||||||||||||||||    
T  21288713 atttgcatcaaaaatataatattccctttcaaaatatatttgcataaaatcgttcttcatacggtaccgaaaatatatttattgtccataaatatatttt 21288614  T
Q  193 cagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||| |||        |||||| ||||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  21288613 cagcacaaaatatattttaaacaaatcttttttatttttagcaacaatattctccatccatcaaattttgagttatactacaa 21288531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 18466574 - 18466453
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18466574 ctcctttagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 18466475  T
Q  176 gtccataaatatattttcagca 197  Q
    ||||||||||||||||| ||||    
T  18466474 gtccataaatatatttttagca 18466453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 125 - 270
Target Start/End: Original strand, 17415748 - 17415893
Alignment:
Q  125 aaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntctttta 224  Q
    |||||||||||||||||||  ||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||| ||||       |||||||    
T  17415748 aaatatatttgcatcaaattttccttcatacagtacaaaaatatatttattgtccataaatatattttcagcaaaaaatatatttgaaacaaatctttta 17415847  T
Q  225 tatttttagcaacaatattcttcttccatcaaattttgagtcatac 270  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  17415848 tatttttagcaacaatattcttcatccatcaaattttgagtcatac 17415893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 15143373 - 15143262
Alignment:
Q  79 cttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtc 178  Q
    ||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |||||||||||    
T  15143373 cttcagtgaaagaatatttgcatcaaa-------tattccctttcaaaatatatttgcatcaaatcttccttcatatggtacaaaaatgtatttattgtc 15143281  T
Q  179 cataaatatattttcagca 197  Q
    |||||||||||||| ||||    
T  15143280 cataaatatatttttagca 15143262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 275
Target Start/End: Original strand, 6661929 - 6662031
Alignment:
Q  173 attgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatacta 272  Q
    |||||||||||||||||||||| |||||||||| ||||       | |||||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  6661929 attgtccataaatatattttcaacacaaaatatatttgaaacaaatattttatatttttagcaacaatattcttcatccatcaagttttaagtcatacta 6662028  T
Q  273 caa 275  Q
    |||    
T  6662029 caa 6662031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 40221408 - 40221340
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatc 144  Q
    ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| | ||||||    
T  40221408 ctcctgcagtgaaagaatatttgcatcaaaaatataatattccttttcaaaatatatttgaaacaaatc 40221340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 40221341 - 40221284
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||||||||||    
T  40221341 tcttttatatttttagcaacaatattcttcatcaattaaattttgagtcatactacaa 40221284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 18466465 - 18466413
Alignment:
Q  223 tatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  18466465 tatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 18466413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 15143274 - 15143225
Alignment:
Q  223 tatatttttagcaacaatattcttcttccatcaaattttgagtcatacta 272  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  15143274 tatatttttagcaacaatattctccatccatcaaattttgagtcatacta 15143225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 6661594 - 6661636
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcat 153  Q
    |||||||||||||||||||||||| | ||||||| ||||||||    
T  6661594 aatattccctttcaaaatatatttacttcaaatcttccttcat 6661636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 5779168 - 5779217
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    ||||||||||||||||||| ||| |||||| || |||||||||| |||||    
T  5779168 tcttttatatttttagcaataatcttcttcatctatcaaattttaagtca 5779217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 32520316 - 32520241
Alignment:
Q  124 aaaatatatttgcatcaaatcgtccttcatacgatacaaaaatata--tttattgtccataaatatattttcagca 197  Q
    ||||||| ||||||||||||  | |||| |||| ||||||||||||  |||| | | |||||||||||||||||||    
T  32520316 aaaatatgtttgcatcaaatttttcttcgtacggtacaaaaatatatttttactctacataaatatattttcagca 32520241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 32 - 311
Target Start/End: Original strand, 22132745 - 22133021
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22132745 aaatttggaacaaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 22132841  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  22132842 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 22132941  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattagtgatgatgtc 311  Q
    |||||||||||||| | ||||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||    
T  22132942 agcaacaatattctccatccatcaaattttgaatcatactacaacattctccaccttgactccaaatttgtgatgatgtc 22133021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 32 - 311
Target Start/End: Original strand, 14787779 - 14788055
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14787779 aaatttggaacgaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 14787875  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||       ||||||||||||||    
T  14787876 tttgcatcaaatcgttctttatacggtacaaaaatatatttattgtccataaatatattttcaccacaaaatatatttgaaacaaatcttttatattttt 14787975  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattagtgatgatgtc 311  Q
    ||||||| |||||| | ||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||    
T  14787976 agcaacattattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattagcgatgatgtc 14788055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 76 - 309
Target Start/End: Complemental strand, 5100944 - 5100711
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||    
T  5100944 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacggtacaaaaatatatttgtt 5100845  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  5100844 gtccataaatatattttcagcacaaaatatatttaaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 5100745  T
Q  276 aattctcaaccttgactccaaattagtgatgatg 309  Q
     |||||| |||||||||| ||||||| |||||||    
T  5100744 cattctccaccttgactctaaattagcgatgatg 5100711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 22134976 - 22135217
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         ||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  22134976 aaatttggaacaaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgaatcaaaaatataatattccctttcaaaatata 22135073  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  22135074 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 22135173  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  22135174 agcaacaatattctccatccatcaaattttgagtcatactacaa 22135217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 56030390 - 56030191
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  56030390 ctccttcagtgaaagaatatttgcaccaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacggtacaaaaatatatttatt 56030291  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  56030290 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 56030191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 24348159 - 24347961
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  24348159 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacaatacaaaaatatatttatt 24348060  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||| ||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  24348059 gtccataaatatattttc-gcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 24347961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 44600227 - 44600426
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44600227 ctccttcagtgaaagaatatttgcatcaaaaatataatattcccttttaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 44600326  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||||||| |||| ||||       |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  44600327 gtccataaatatattttcagcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaa 44600426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 17662625 - 17662824
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||    
T  17662625 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcgtacggtacaaaaatatatttatt 17662724  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||||||| | ||||||||||||  |||||||||||||    
T  17662725 gtccataaatatattttcagcacaaaatatatttaaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttgtagtcatactacaa 17662824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 32 - 261
Target Start/End: Complemental strand, 30136558 - 30136331
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||| ||||||||||||||||||||||||||||         |||||||| |||||||||||||| || ||||||||||||||| |||| ||||||||    
T  30136558 aaatttagaacgaatatcacactgaagatacgttt--tttttttctccttcaatgaaagaatatttgaatcaaaaatataatattctcttttaaaatata 30136461  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||| ||||       ||||||||||||||    
T  30136460 tttgcatcaaatcgttcttcatacagtacaaaaatatatttattgtccataaatatattttcagcacaatatatatttgaaacaaatcttttatattttt 30136361  T
Q  232 agcaacaatattcttcttccatcaaatttt 261  Q
    |||||||||||||| | | |||||||||||    
T  30136360 agcaacaatattctccattcatcaaatttt 30136331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 127 - 275
Target Start/End: Original strand, 47211158 - 47211306
Alignment:
Q  127 atatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttata 226  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||       |||||||||    
T  47211158 atatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttgagcacaaaatatatttgaaacaaatcttttata 47211257  T
Q  227 tttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||    
T  47211258 tttttagcaacaatattctccatccatcaaattttaagtcatactacaa 47211306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 36 - 275
Target Start/End: Original strand, 38890478 - 38890699
Alignment:
Q  36 ttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatatt-ccctttcaaaatatattt 134  Q
    ||||||||||||||||| ||||||||| ||||        |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  38890478 ttggaacgaatatcacattgaagatacatttcttttttt-ctcctttagtgaaagaatatttgcatcaaaaatataatatttccctttcaaaatatattt 38890576  T
Q  135 gcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagc 234  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |  |||||                |||||||||||||||||    
T  38890577 gcatcaaatcgtccttcatacaatacaaaaatatatttattgtccataaatatatttgaa--acaaa----------------tcttttatatttttagc 38890658  T
Q  235 aacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||| | |||||||||||||||||||| ||||||    
T  38890659 aacaatattctccatccatcaaattttgagtcatgctacaa 38890699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 111 - 275
Target Start/End: Complemental strand, 10112787 - 10112628
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttg 210  Q
    ||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  10112787 aatattctctttcaaa-tatatttacatcaaatcttccttcatacgatacaaaaatatatttattgtccataaatatagtttcagcacaaaatatatttg 10112689  T
Q  211 nnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
            ||||||||||||||||||||||||||||| | || |||||||| |||||||||||||    
T  10112688 aaac----cttttatatttttagcaacaatattcttcattcaacaaattttaagtcatactacaa 10112628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 19322685 - 19322547
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||| |||||||||| ||||||||| ||||        |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19322685 aaatttggaatgaatatcacattgaagatacatttcttttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 19322586  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatat 170  Q
    ||||||||||||||||||| ||||  |||||||||||||    
T  19322585 tttgcatcaaatcgtcctttatacagtacaaaaatatat 19322547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 275
Target Start/End: Complemental strand, 9022225 - 9022062
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttg 210  Q
    |||||||||||| ||||||||||||||||||||| | ||||||||| || ||||||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  9022225 aatattcccttttaaaatatatttgcatcaaatctttcttcatacggtagaaaaatatatttattgt-cataaatatattttcagcaaaaaatatatttg 9022127  T
Q  211 nnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
           || |||||||||| | ||||||||||  || ||||| ||||||||| |||||||||||    
T  9022126 aaacaaatcatttatattttcaacaacaatatttctcatccataaaattttgaatcatactacaa 9022062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 123 - 275
Target Start/End: Complemental strand, 9863650 - 9863501
Alignment:
Q  123 caaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttt 222  Q
    |||||||||||||||||||||| |||||||| |   ||||||||||||||||||| |||||||||||||| |||||||||||| ||||       || ||    
T  9863650 caaaatatatttgcatcaaatcttccttcatgc---acaaaaatatatttattgttcataaatatatttttagcacaaaatatgtttgaaacaaatcatt 9863554  T
Q  223 tatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||| ||||||||  ||| |||| |||||||||||||||| |||||    
T  9863553 tatatttttagtaacaatatatttcatccaacaaattttgagtcatattacaa 9863501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 54929094 - 54929180
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    ||||||||  || ||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  54929094 aatattcctattaaaaatatatttgcatcaaatcttccttcatacggtacaaaaatatattttttgtccataaatatattttcagca 54929180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 10979755 - 10979676
Alignment:
Q  118 cctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    ||||| ||||||||||||||||||||| ||||||||||   |||||||||||||| ||||||||||||||||||||||||    
T  10979755 cctttaaaaatatatttgcatcaaatcttccttcatacagcacaaaaatatatttgttgtccataaatatattttcagca 10979676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 53405071 - 53405001
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgt 146  Q
    |||||| ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||    
T  53405071 ctcctttagtgaaagaatatttgcatcaaaaatataatttttcctttcaaaatatatttgcatcaaatcgt 53405001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 14789512 - 14789569
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  14789512 tcttttatatttttagcaacattattcttcatccatcaaattttgagtcatactacaa 14789569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 275
Target Start/End: Complemental strand, 19322510 - 19322410
Alignment:
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaa-tattcttcttccatcaaattttgagtcatactaca 274  Q
    |||||||||||||||||||| | ||||||| |||        ||||||||||||||||||| || |||||| | ||||||||||||||||||||||||||    
T  19322510 gtccataaatatattttcagtataaaatatatttaaaacaaatcttttatatttttagcaaaaaatattctccatccatcaaattttgagtcatactaca 19322411  T
Q  275 a 275  Q
    |    
T  19322410 a 19322410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 267
Target Start/End: Original strand, 38209098 - 38209259
Alignment:
Q  111 aatattccctttcaaa-atatatttgcatcaaatcgtccttcatacgatacaaaaatatatt--tattgtc--cataaatatattttcagcacaaaatat 205  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||||  ||||||||||||||  |||| ||  ||  ||| |  ||  ||||||||||||    
T  38209098 aatattccttttcaaatatatatttgcatcaaatcttccttcatacagtacaaaaatatatttatattttcaacaacaatcttcttgaagcacaaaatat 38209197  T
Q  206 ctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
     |||        ||||||||||||||| |||||||||| ||| |||||||||||||||||||    
T  38209198 atttaaaacaaatcttttatatttttaacaacaatatttttcatccatcaaattttgagtca 38209259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 29609838 - 29609897
Alignment:
Q  135 gcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 194  Q
    |||||||||| ||||||||||| |||||||||||||||| | | ||||||||||||||||    
T  29609838 gcatcaaatcttccttcatacggtacaaaaatatatttactcttcataaatatattttca 29609897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 5516701 - 5516752
Alignment:
Q  146 tccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||| ||||    
T  5516701 tccttcatacgataaaaaaatatatttattatctataaatatatttttagca 5516752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 14647175 - 14647214
Alignment:
Q  158 tacaaaaatatatttattgtccataaatatattttcagca 197  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  14647175 tacaaaaatatatttgttgtccatgaatatattttcagca 14647214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 263
Target Start/End: Original strand, 29609948 - 29609983
Alignment:
Q  228 ttttagcaacaatattcttcttccatcaaattttga 263  Q
    |||||||||||||||||||| |||||||||||||||    
T  29609948 ttttagcaacaatattcttcatccatcaaattttga 29609983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 54929220 - 54929267
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    |||||||||||||||||||||||||| |  |||||||||||||| |||||    
T  54929220 tcttttatatttttagcaacaatattat--ttccatcaaattttaagtca 54929267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 16455074 - 16455017
Alignment:
Q  253 tcaaattttgagtca-tactacaaaattctcaaccttgactccaaattagtgatgatg 309  Q
    |||||| |||||||| | |||||| | |||| ||||||||||||||||||||||||||    
T  16455074 tcaaatattgagtcacttctacaacaatctccaccttgactccaaattagtgatgatg 16455017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 5516793 - 5516833
Alignment:
Q  221 tttatatttttagcaacaatattcttcttccatcaaatttt 261  Q
    ||||||||||||||||||||||||| | | |||||||||||    
T  5516793 tttatatttttagcaacaatattctccattcatcaaatttt 5516833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 9e-98; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 76 - 309
Target Start/End: Complemental strand, 20299356 - 20299123
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20299356 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 20299257  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  20299256 gtccataaatatattttcagcacaaaatatatttgaaataaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 20299157  T
Q  276 aattctcaaccttgactccaaattagtgatgatg 309  Q
     |||||| |||||||||| |||||||||||||||    
T  20299156 cattctccaccttgactctaaattagtgatgatg 20299123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 76 - 309
Target Start/End: Original strand, 7092567 - 7092800
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7092567 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 7092666  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| ||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  7092667 gtccataaatatatcttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 7092766  T
Q  276 aattctcaaccttgactccaaattagtgatgatg 309  Q
     |||||| |||||||||| |||||||||||||||    
T  7092767 cattctccaccttgactctaaattagtgatgatg 7092800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 76 - 309
Target Start/End: Complemental strand, 28487450 - 28487217
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  28487450 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcattcttcatacgatacaaaattatatttatt 28487351  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  28487350 gtccataaatatattttcagcacaaaatatatttgaagcaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 28487251  T
Q  276 aattctcaaccttgactccaaattagtgatgatg 309  Q
     |||||| |||||||||| |||||||||||||||    
T  28487250 cattctccaccttgactctaaattagtgatgatg 28487217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 76 - 309
Target Start/End: Original strand, 31156299 - 31156532
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31156299 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 31156398  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||||||| |||| ||||       |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  31156399 gtccataaatatattttcagcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaa 31156498  T
Q  276 aattctcaaccttgactccaaattagtgatgatg 309  Q
     |||||| |||||||||| |||||||||||||||    
T  31156499 cattctccaccttgactctaaattagtgatgatg 31156532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 76 - 309
Target Start/End: Complemental strand, 38396187 - 38395954
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38396187 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 38396088  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    || ||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  38396087 gtacataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttggagtcatactacaa 38395988  T
Q  276 aattctcaaccttgactccaaattagtgatgatg 309  Q
     |||||| |||||||||| |||||||||||||||    
T  38395987 cattctccaccttgactctaaattagtgatgatg 38395954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 1849866 - 1849667
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849866 ctccttcagtgaaagaatatctgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 1849767  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849766 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 1849667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 7094772 - 7095013
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7094772 aaatttggaacgaataccacactgaagatacgttt--ttttttcctccttcagtgaaagaatatttgcataaaaaatataatatttcctttcaaaatata 7094869  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  7094870 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 7094969  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  7094970 agcaacaatattctccatccatcaaattttgagtcatactacaa 7095013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 32 - 309
Target Start/End: Original strand, 7349625 - 7349899
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||||||||||||||||||||||         ||| |||||||||||||||||||| | ||||||||||||||| |||||||||||||    
T  7349625 aaatttggaacaaatatcacactgaagatacgttt---ttttttctcattcagtgaaagaatatttgcctcaaaaatataatattctctttcaaaatata 7349721  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||       ||||||||||||||    
T  7349722 tttgcatcaaatcgttcttcatgcgatacaaaaatatatttattgtccataaatatattttcagcacaatatatatttgaaacaaatcttttatattttt 7349821  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattagtgatgatg 309  Q
    |||||||||||||| | |||||||| |||||||||||||||||| |||||| |||||||||| |||||||||||||||    
T  7349822 agcaacaatattctccatccatcaatttttgagtcatactacaacattctccaccttgactctaaattagtgatgatg 7349899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 76 - 309
Target Start/End: Original strand, 7470420 - 7470653
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7470420 ctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 7470519  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       | ||||||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  7470520 gtccataaatatattttcagcacaaaatatatttgaaacaaatgttttatatttttagcaataatattctccatccatcaaattttgagtcatactacaa 7470619  T
Q  276 aattctcaaccttgactccaaattagtgatgatg 309  Q
     |||||| |||||||||| ||||| |||||||||    
T  7470620 cattctccaccttgactctaaatttgtgatgatg 7470653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 1606372 - 1606173
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1606372 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 1606273  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||||||| |||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1606272 gtccataaatatattttcagcacaatatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 1606173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 3035660 - 3035417
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| || |||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3035660 aaatttggaacaaataccatactgaagatacgttttttttctttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 3035561  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  3035560 tttgcatcaaatcattcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 3035461  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  3035460 agcaacaatattctccatccatcaaattttgagtcatactacaa 3035417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 11757167 - 11756927
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11757167 aaatttggaacaaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 11757071  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  11757070 tttgcatcaaatagttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 11756971  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  11756970 agcaacaatattctccatccatcaaattttgagtcatactacaa 11756927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 32 - 272
Target Start/End: Complemental strand, 20625977 - 20625739
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  20625977 aaatttggaacgaataccacactgaagatacgttt--ttttttgctccttcagtgaaaaaatatttgcatcaaaaatataatattccctttcaaaatata 20625880  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  20625879 tttgtatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 20625780  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatacta 272  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  20625779 agcaacaatattctccatccatcaaattttgagtcatacta 20625739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 32 - 272
Target Start/End: Complemental strand, 20629868 - 20629630
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  20629868 aaatttggaacgaataccacactgaagatacgttt--ttttttgctccttcagtgaaaaaatatttgcatcaaaaatataatattccctttcaaaatata 20629771  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  20629770 tttgtatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 20629671  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatacta 272  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  20629670 agcaacaatattctccatccatcaaattttgagtcatacta 20629630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 32 - 272
Target Start/End: Complemental strand, 20642287 - 20642049
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  20642287 aaatttggaacgaataccacactgaagatacgttt--ttttttgctccttcagtgaaaaaatatttgcatcaaaaatataatattccctttcaaaatata 20642190  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  20642189 tttgtatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 20642090  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatacta 272  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  20642089 agcaacaatattctccatccatcaaattttgagtcatacta 20642049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 77 - 275
Target Start/End: Complemental strand, 47865528 - 47865330
Alignment:
Q  77 tccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattg 176  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47865528 tccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattg 47865429  T
Q  177 tccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  47865428 tccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttggagtcatactacaa 47865330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 7472330 - 7472572
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  7472330 aaatttggaacaaataccacactgaagatacgttt-ttttttttctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 7472428  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  7472429 tttgcatcaaatcgttcttcatatgatacaataatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 7472528  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  7472529 agcaacaatattctccatccatcaaattttgagtcatactacaa 7472572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 28485462 - 28485263
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28485462 ctccttcggtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 28485363  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  28485362 gtccataaatatattttcagcacaaaatatatttgaaacaaatattttatatttttagcaacaatattcttcatccatcaaattttgaatcatactacaa 28485263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 7352004 - 7352244
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||||||||||||||||||||||         ||| |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  7352004 aaatttggaacaaatatcacactgaagatacgttt---ttttttctcattcagtgaaagaatatttgcctcaaaaatataatattccctttcaaaatata 7352100  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||       ||||||||||||||    
T  7352101 tttgcatcaaatcgttcttcatgcgatacaaaaatatatttattgtccataaatatattttcagcacaatatatatttgaaacaaatcttttatattttt 7352200  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||| ||||||||||||||||||    
T  7352201 agcaacaatattctccatccatcaatttttgagtcatactacaa 7352244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 18345480 - 18345239
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  18345480 aaatttggaacaaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccatttcaaaatata 18345383  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||       ||||||||||||||    
T  18345382 tttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtcaataaatatatttttagcacaaaatatatttgaaacaaatcttttatattttt 18345283  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  18345282 agcaacaatattctccatccatcaaattttgagtcatactacaa 18345239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 37412474 - 37412714
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  37412474 aaatttggaacgaataacacactgaagatacgttt---ttttttctccttcagtggaagaatatttgcatcaaaaatataatattccctttcaaaatata 37412570  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||| | ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  37412571 tttgcatcaaatcattcttcatacgttacataattatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 37412670  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  37412671 agcaacaatattctccatccatcaaattttgagtcatactacaa 37412714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 76 - 269
Target Start/End: Complemental strand, 24258358 - 24258166
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  24258358 ctccttcagtgaaagaatatttacatcaaaaatataatattccctttcaaaatatatttgcatcaa-tcgtccttcatactgtacaaaaatatatttatt 24258260  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcata 269  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24258259 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtcata 24258166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 21470682 - 21470881
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||    
T  21470682 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatattcgcatcaaatcgttcttcatacgatataaaaatatatttatt 21470781  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||| |||||| |||||||    
T  21470782 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttggagtcaaactacaa 21470881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 21990094 - 21989855
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||| ||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21990094 aaatttggaacgaataccacacagaagatacgttt--ttttttcctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 21989997  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  ||| ||||| ||||       ||||||||||||||    
T  21989996 tttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttca--acacaatatatttgaaacaaatcttttatattttt 21989899  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||| ||||||||||||    
T  21989898 agcaacaatattctccatccatcaaattttgggtcatactacaa 21989855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 42331392 - 42331591
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||    
T  42331392 ctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacggtacaaaaatatacttatt 42331491  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  42331492 gtccataaatatattttcagcacaaaatatatttaaaacaaatcttttatatttttagcaacaatattcttcattcatcaaattttaagtcatactacaa 42331591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 78 - 275
Target Start/End: Complemental strand, 38393882 - 38393685
Alignment:
Q  78 ccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgt 177  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38393882 ccttcagtgaaagaatatttgcatcaaaaatataacattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgt 38393783  T
Q  178 ccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||| |||||||||||||||||| ||||       |||| ||||||||||||||||||||||| | |||||||||||| || |||||||||||    
T  38393782 ccataaataaattttcagcacaaaatatatttgaaacaaatcttatatatttttagcaacaatattctccatccatcaaatttagaatcatactacaa 38393685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 13099822 - 13099993
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13099822 aaatttggaacgaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 13099919  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatat 205  Q
    |||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13099920 tttgtatcaaatcgttcttcatacggtacgaaaatatatttattgtccataaatatattttcagcacaaaatat 13099993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 43253914 - 43254035
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43253914 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 43254013  T
Q  176 gtccataaatatattttcagca 197  Q
    ||||||||||||||||| ||||    
T  43254014 gtccataaatatatttttagca 43254035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 3677223 - 3676999
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3677223 aaatttggaacgaatatcacactgaagatacgttttttttttctctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 3677124  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||| |||||||||||                   |||||||||||||||||| ||||       ||||||||||||||    
T  3677123 tttgcatcaaatcgttcttcatacggtacaaaaatat-------------------attttcagcacaaaatatatttgaaacaaatcttttatattttt 3677043  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | || ||||||||||||||||||||||||    
T  3677042 agcaacaatattctccatctatcaaattttgagtcatactacaa 3676999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 129 - 275
Target Start/End: Complemental strand, 443474 - 443328
Alignment:
Q  129 atatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatt 228  Q
    ||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||    
T  443474 atatttgcatcaaattgttcttcagacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatt 443375  T
Q  229 tttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  443374 tttagcaacaatattctccatccatcaaattttgagtcatactacaa 443328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 20297301 - 20297163
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  20297301 aaatttggaacaaataccacactgaagatacgttt---ttttttctccttcggtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 20297205  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatattta 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  20297204 tttgcatcaaatcgttcttcatacgatacaaaaatatattta 20297163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 111 - 274
Target Start/End: Original strand, 40281824 - 40281989
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttg 210  Q
    |||||||| ||| |||||||||  | |||||||  || |||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| ||||    
T  40281824 aatattccttttaaaaatatatccgtatcaaatattctttcatacggtacaaaaatatatttattttccataaatatattttcaacacaaaatatatttg 40281923  T
Q  211 nnnnnnntcttttatatttttagcaacaa--tattcttcttccatcaaattttgagtcatactaca 274  Q
           | ||||||||||||||||||||  | |||||| ||||||||||||||||||||||||||    
T  40281924 aaacaaatattttatatttttagcaacaaattcttcttcatccatcaaattttgagtcatactaca 40281989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 12310442 - 12310528
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||||| ||| ||||||||||| ||||||||| ||||||||||| |||||||||||||| | ||||| ||| |||| ||||||||    
T  12310442 aatattccttttaaaaatatatttacatcaaatcttccttcatacggtacaaaaatatattaactgtccttaagtataatttcagca 12310528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 20297157 - 20297108
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  20297157 tcttttatatttttagcaacaatattctccatccatcaaattttgagtca 20297108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 10690732 - 10690684
Alignment:
Q  219 cttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    |||||||||||||||||||||| |||| | |||||||||||||||||||    
T  10690732 cttttatatttttagcaacaatcttctccctccatcaaattttgagtca 10690684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 12484976 - 12485023
Alignment:
Q  150 tcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||    
T  12484976 tcatacgatacaaaaatatatttgctatccataaatatattttcagca 12485023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 12506407 - 12506454
Alignment:
Q  150 tcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||    
T  12506407 tcatacgatacaaaaatatatttgctatccataaatatattttcagca 12506454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 43254023 - 43254069
Alignment:
Q  223 tatatttttagcaacaatattcttcttccatcaaattttgagtcata 269  Q
    ||||||||||||||||||||||| | |||||||||||||||| ||||    
T  43254023 tatatttttagcaacaatattctccatccatcaaattttgagacata 43254069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 10690854 - 10690773
Alignment:
Q  102 aaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataa 183  Q
    |||| ||| |||||||| ||| ||||||||||||||||||||  ||  ||| | | |||||||||||||||||||| |||||    
T  10690854 aaaatataaaatattccttttaaaaatatatttgcatcaaatattctgtcacatggtacaaaaatatatttattgtacataa 10690773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 12657600 - 12657647
Alignment:
Q  150 tcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||||||||||||||||||||  | ||||| |||||||||||||||    
T  12657600 tcatacgatacaaaaatatatttgctatccatgaatatattttcagca 12657647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 76 - 309
Target Start/End: Original strand, 35215983 - 35216216
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  35215983 ctccttcagtgaaagaatatctgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttctttatacgatacaaaaatatatttatt 35216082  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35216083 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagtcatactacaa 35216182  T
Q  276 aattctcaaccttgactccaaattagtgatgatg 309  Q
     |||||| |||||||||| |||||||||||||||    
T  35216183 cattctccaccttgactctaaattagtgatgatg 35216216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 42452650 - 42452451
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42452650 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 42452551  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  42452550 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttaagtcatactacaa 42452451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 23452628 - 23452827
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23452628 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 23452727  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||| ||||||||||| ||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  23452728 gtccataaatttattttcagcataaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 23452827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 35218364 - 35218563
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  35218364 ctccttcagtgaaagaatatttgcatcaaaaatataatattctctttcaaaatatatttgcatcaaatcgttctttatacgatacaaaaatatatttatt 35218463  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35218464 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagtcatactacaa 35218563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 42923893 - 42924092
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  42923893 ctccttcagtgaaagaatatttgcatcaaaaatataatatttcttttcaaaatatatttgcatcaaatcgttcttcatacggtacaaaaatatatttatt 42923992  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  42923993 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 42924092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 27583671 - 27583905
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||| ||||||| |||||||||| ||||        |||||||||||||||||||||||||| |||       |||||| ||||||||||||    
T  27583671 aaatttggaacggatatcacgctgaagatacatttctttttt--ctccttcagtgaaagaatatttgcatcaaa-------tattccttttcaaaatata 27583761  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||  ||||||||| | || ||||||||||||||||| ||||||||||| ||||||||||||||| ||||       ||||||||||||||    
T  27583762 tttgcatcaaatattccttcatatggtataaaaatatatttattgttcataaatatatcttcagcacaaaatatatttgaaacaaatcttttatattttt 27583861  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  27583862 agcaacaatattcttcatccatcaaaatttgagtcatactacaa 27583905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 111 - 267
Target Start/End: Original strand, 28568584 - 28568740
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttg 210  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  28568584 aatattccctttcaaaatatatttgcatcaaatcttccttcacacgatacaaaaatatatttattgtccataaatatattttcaaaacaaaatatatttg 28568683  T
Q  211 nnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
           ||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  28568684 aaacaaatcttttatagttttagcaacaatattcttcatctatcaaattttgagtca 28568740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 15693755 - 15693669
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  15693755 aatatcccctttaaaaatatatttgcatcaaatcttccttcatacggtacaaaaatatatttattgcccataaatatattttcagca 15693669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 275
Target Start/End: Original strand, 27136367 - 27136503
Alignment:
Q  147 ccttcatacgatacaaaaatatatttattgtccataaatatattt--------tcagcacaaaatatctttgnnnnnnntcttttatatttttagcaaca 238  Q
    |||||||||| |||||||||||||||||| |||||||||||||||        ||| |||||||||| ||||       |||||||||||||||||| ||    
T  27136367 ccttcatacggtacaaaaatatatttattttccataaatatatttatatattttcaacacaaaatatatttgaaacaaatcttttatatttttagcacca 27136466  T
Q  239 atattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||| |||||||||||||||||||||||||||    
T  27136467 atattcttcatccatcaaattttgagtcatactacaa 27136503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 34575608 - 34575696
Alignment:
Q  182 aaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatac 270  Q
    |||||||||||||||||||||||| |||        |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34575608 aaatatattttcagcacaaaatatatttagaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagtcatac 34575696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 7502723 - 7502638
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagc 196  Q
    |||||| ||||| ||||||||||||||||||||| ||  |||||| |||||||||||| |||||||| ||||||||||||||||||    
T  7502723 aatatttcctttaaaaatatatttgcatcaaatcttctgtcatacaatacaaaaatatttttattgttcataaatatattttcagc 7502638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 39287042 - 39286971
Alignment:
Q  126 aatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    ||||||||||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||| ||||    
T  39287042 aatatatttgcatcaaatcttcattcatatggtacaaaaatatatttattgtccataaatatattttaagca 39286971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 41304806 - 41304884
Alignment:
Q  118 cctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    ||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||| | |||||||||||||| ||||||    
T  41304806 cctttaaaaatatatttgcatcaaatcttccttcatatg-tacaaaaatatatttactatccataaatatattgtcagca 41304884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 34575528 - 34575617
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatattt 172  Q
    |||||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||  ||||| ||| | |||||||||||||||    
T  34575528 ctccttcagtgaaagaatatttgcatcaaa-------tattccctttcaaaatatatttgcatcaaattttcctttatatggtacaaaaatatattt 34575617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 41303457 - 41303535
Alignment:
Q  119 ctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||| |||||||||||| ||||| || ||||||| ||| ||||||| |||||||| |||||||||||||||||||||||    
T  41303457 ctttaaaaatatatttgaatcaattcttccttcacacggtacaaaattatatttactgtccataaatatattttcagca 41303535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 28568395 - 28568346
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  28568395 tcttttatatttttaacaacaatattcttcatccatcaaattttgagtca 28568346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 15693629 - 15693583
Alignment:
Q  221 tttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    ||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  15693629 tttatatttttagcaacaatattattcatccatcaaattttaagtca 15693583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 41303573 - 41303623
Alignment:
Q  218 tcttttatatttt-tagcaacaatattcttcttccatcaaattttgagtca 267  Q
    ||||||||||||| |||||||||| |||||| ||||||||||| |||||||    
T  41303573 tcttttatattttttagcaacaatcttcttcatccatcaaattctgagtca 41303623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 1978 - 1737
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1978 aaatttggaacgaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 1881  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  1880 tttgcatcaaatcttccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 1781  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  1780 agcaacaatattcttcttccttcaaattttgagtcatactacaa 1737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 32 - 309
Target Start/End: Complemental strand, 458193 - 457918
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  458193 aaatttggaacaaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 458096  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||       ||||||||||||||    
T  458095 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccacaaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 457996  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattagtgatgatg 309  Q
    |||||||||||||  | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||||    
T  457995 agcaacaatattccccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattagtaatgatg 457918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 4104282 - 4104481
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4104282 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 4104381  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||| ||| ||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4104382 gtccataaatatattttcagcataaagtatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 4104481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 76 - 311
Target Start/End: Complemental strand, 42992154 - 42991919
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  42992154 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacaatacaaaaatatatttatt 42992055  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||        |||||||||||||| |||||||||||| | |||||||||||||||||||||||||||    
T  42992054 gtccataaatatattttcagcacaaaatatatttgaaacaaaccttttatatttttaacaacaatattctccatccatcaaattttgagtcatactacaa 42991955  T
Q  276 aattctcaaccttgactccaaattagtgatgatgtc 311  Q
     |||||  |||||||||| |||||||||||||||||    
T  42991954 cattcttcaccttgactctaaattagtgatgatgtc 42991919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 32 - 311
Target Start/End: Original strand, 53915840 - 53916116
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| |||||| |||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  53915840 aaatttggaacgaataccacactcaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 53915936  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  53915937 tttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 53916036  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattagtgatgatgtc 311  Q
    |||||||||||||| | ||| ||||||||||||||||||||||| |||||   ||||||||| ||||||||||| |||||    
T  53916037 agcaacaatattctccatccctcaaattttgagtcatactacaacattcttcgccttgactctaaattagtgataatgtc 53916116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 746664 - 746424
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  746664 aaatttggaacaaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 746568  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  746567 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 746468  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  746467 agcaacaatattctccatccatcaaattttgagtcatactacaa 746424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 25533347 - 25533109
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||| |||| |||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25533347 aaatttagaacaaatatcacactgaagatacgttt-----ttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 25533253  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||       ||||||||||||||    
T  25533252 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcaaaaaatatatttgaaacaaatcttttatattttt 25533153  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  25533152 agcaacaatattctccatccatcaaattttgagtcatactacaa 25533109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 51943289 - 51943044
Alignment:
Q  27 atcacaaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaa 126  Q
    |||| |||||||||||||||| ||||||||||||||||||         |||||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  51943289 atcataaatttggaacgaataccacactgaagatacgttt---ttctttctccttcaatgaaagaatatttacatcaaaaatataatattccctttcaaa 51943193  T
Q  127 atatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttata 226  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||    
T  51943192 atatatttgcatcaaatcattcttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttata 51943093  T
Q  227 tttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51943092 tttttagcaacaatattcttcatccatcaaattttgagtcatactacaa 51943044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 10621886 - 10622125
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10621886 aaatttggaacaaataccacactgaagatacgttt----tttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 10621981  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||       ||||||||||||||    
T  10621982 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatatcttcagcacaatatatatttgaaacaaatcttttatattttt 10622081  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  10622082 agcaacaatattctccatccatcaaattttgagtcatactacaa 10622125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 455774 - 455575
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  455774 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 455675  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||| |||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  455674 gtccacaaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattccccatccatcaaattttgagtcatactacaa 455575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 1313323 - 1313084
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||||||||||||||| ||||||| |||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1313323 aaatttggaacgaatatcacactaaagatactttt----tttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 1313228  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||| ||||       || |||||||||||    
T  1313227 tttgcatcaaatcgttcttcatacggtacagaaatatatttattgtccataaatatattttcaacacaaaatatatttgaaacaaatcatttatattttt 1313128  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  1313127 agcaacaatattctccatccatcaaattttgagtcatactacaa 1313084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 27635972 - 27636210
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| |||||||||||||| |||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27635972 aaatttggaacgaataccacactgaagatacattt-----ttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 27636066  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||       | ||||||||||||    
T  27636067 tttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaactaatattttatattttt 27636166  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | ||||||||||||| | |||||||||||    
T  27636167 agcaacaatattctccatccatcaaattttaaatcatactacaa 27636210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 80 - 275
Target Start/End: Complemental strand, 41849001 - 41848806
Alignment:
Q  80 ttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtcc 179  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41849001 ttcagttaaagaatatttgcatcaaaaatataatattccttttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtcc 41848902  T
Q  180 ataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  41848901 ataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 41848806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 42990153 - 42989954
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42990153 ctccttcagtgaaagaatatttgcatcaaaaatataatattctctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 42990054  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||| |||||||| ||||||| ||||       | |||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  42990053 gtccataaatatactttcagcaaaaaatatatttgaaacaaattttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 42989954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 53918008 - 53918245
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||| |||||||| ||||||||||||||||||         |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  53918008 aaatttgaaacgaataccacactgaagatacgttt---ttttttctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 53918104  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| |||| |||||||||| ||||       ||||||||||||||    
T  53918105 tttgcatcaaatcgttcttcatacggtaaaaaaatatatttattgtccataaatatatgttcaacacaaaatatatttgaaacaaatcttttatattttt 53918204  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatacta 272  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  53918205 agcaacaatattctccatccatcaaattttgagtcatacta 53918245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 11066429 - 11066346
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 194  Q
    ||||||| |||| ||||||||||||||||||||  ||||||||| | || ||||||||||||||||||||||||| ||||||||    
T  11066429 aatattctctttaaaaatatatttgcatcaaatattccttcatatggtaaaaaaatatatttattgtccataaatgtattttca 11066346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 6561672 - 6561615
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  6561672 tcttttatatttttagcaacaatattcttcatccatcaaatttcgagtcatactacaa 6561615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 54287487 - 54287559
Alignment:
Q  122 tcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 194  Q
    ||||||||||||||||||||||  ||||||||||  ||||||||| |||||||| ||||||||||||||||||    
T  54287487 tcaaaatatatttgcatcaaatattccttcatacagtacaaaaatgtatttattatccataaatatattttca 54287559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 53974011 - 53974077
Alignment:
Q  127 atatatttgcatcaaatcgtcctt-catacgatacaaaaatatatttattgtccataaatatatttt 192  Q
    |||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  53974011 atatatttgcatcaaatcttcctttcatacggtacaaaaatatatttattgtctataaatatatttt 53974077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 11072801 - 11072731
Alignment:
Q  127 atatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||||||||||||||| ||| | ||||| ||||||||| ||||| |||||||||||| |||||||||||    
T  11072801 atatatttgcatcaaatcttccgtaatacggtacaaaaatctatttgttgtccataaatgtattttcagca 11072731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 53974148 - 53974197
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  53974148 tcttttatatttttaacaacaacattcttcatccatcaaattttgagtca 53974197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 6561724 - 6561689
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttc 67  Q
    ||||||||||||||||||||||||||||||||||||    
T  6561724 aaatttggaacgaatatcacactgaagatacgtttc 6561689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 11072690 - 11072644
Alignment:
Q  221 tttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||||    
T  11072690 tttatattttttgcaacaatcttcttcatccatcaaattttgagtca 11072644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 5535882 - 5535929
Alignment:
Q  150 tcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||||||||||| |||| |||  |||||||||||||||||||||||    
T  5535882 tcatacgatacaaatatatcttttctgtccataaatatattttcagca 5535929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 32 - 311
Target Start/End: Complemental strand, 51951 - 51675
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51951 aaatttggaacgaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 51855  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||       ||||||||||||||    
T  51854 tttgcatcaaatcgttctttatacggtacaaaaatatatttattgtccataaatatattttcaccacaaaatatatttgaaacaaatcttttatattttt 51755  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattagtgatgatgtc 311  Q
    ||||||| |||||| | ||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||    
T  51754 agcaacattattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattagcgatgatgtc 51675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 50218 - 50161
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  50218 tcttttatatttttagcaacattattcttcatccatcaaattttgagtcatactacaa 50161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 170115 - 170076
Alignment:
Q  158 tacaaaaatatatttattgtccataaatatattttcagca 197  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  170115 tacaaaaatatatttgttgtccatgaatatattttcagca 170076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 608716 - 608472
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtt-tcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatat 130  Q
    ||||||||||| |||||||||| ||||||||||| |         |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  608716 aaatttggaacaaatatcacaccgaagatacgttcttttttttttctccttcagtgaaagaatatttgcataaaatatataatattctctttcaaaatat 608617  T
Q  131 atttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||    
T  608616 atttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttt 608517  T
Q  231 tagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  608516 tagcaacaatattcttcttccatcaaattttgagtgatactacaa 608472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 32 - 311
Target Start/End: Complemental strand, 41384734 - 41384459
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||          ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  41384734 aaatttggaacgaataccacactgaagatacgtttttttttt---tccttcaatgaaagaatatttgcataaaaa-tataatattccctttcaaaatata 41384639  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| || |       ||||||||||||||    
T  41384638 tttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttcagtataaaatatattcgaaacaaatcttttatattttt 41384539  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattagtgatgatgtc 311  Q
    |||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||    
T  41384538 agcaacaatattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattagtgatgatgtc 41384459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 32 - 272
Target Start/End: Complemental strand, 15809204 - 15808967
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15809204 aaatttggaacaaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 15809108  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||       ||||||||||||||    
T  15809107 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcaacacaaaatatatttgaaacaaatcttttatattttt 15809008  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatacta 272  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  15809007 agcaacaatattctccatccatcaaattttgagtcatacta 15808967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 28283571 - 28283811
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    ||||||||||| ||||| |||||||||||||||||         |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  28283571 aaatttggaacaaatattacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattcactttcaaaatata 28283667  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||    
T  28283668 tttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattttt 28283767  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||| |||||||| | |||||||||||||||||||||||||||    
T  28283768 agcaaaaatattctccatccatcaaattttgagtcatactacaa 28283811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 43530072 - 43529873
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 175  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  43530072 ctccttcagtgaaagaatattagcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacaatacaaaaatatatttatt 43529973  T
Q  176 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  43529972 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 43529873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 3873952 - 3873752
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcg-tccttcatacgatacaaaaatatatttat 174  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  3873952 ctccttcagtgaaagaatatttgcatcaaaaatataatattctctttcaaaatatatttgcatcaaatcgtttcttcatacgatacaaaaatatatttat 3873853  T
Q  175 tgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactaca 274  Q
    ||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  3873852 tgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactaca 3873753  T
Q  275 a 275  Q
    |    
T  3873752 a 3873752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 41382662 - 41382421
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41382662 aaatttggaacgaataccacactgaagatacgttt--tttttttctcattcagtgaaagaatatttgcataaaaaatataatatttcctttcaaaatata 41382565  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| || |       ||||||||||||||    
T  41382564 tttgcatcaaatcgttgttcatacggtacaaaaatatatttattgtccataaatatattttcagtataaaatatattcgaaacaaatcttttatattttt 41382465  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    | |||||||||||| | |||||||||||||||||||||||||||    
T  41382464 aacaacaatattctccatccatcaaattttgagtcatactacaa 41382421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 119 - 275
Target Start/End: Complemental strand, 32339252 - 32339096
Alignment:
Q  119 ctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnnt 218  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       |    
T  32339252 ctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaat 32339153  T
Q  219 cttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  32339152 cttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 32339096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 3265635 - 3265750
Alignment:
Q  160 caaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaatt 259  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||    
T  3265635 caaacatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatt 3265734  T
Q  260 ttgagtcatactacaa 275  Q
    ||||||||||||||||    
T  3265735 ttgagtcatactacaa 3265750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 181526 - 181434
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaa 126  Q
    |||||||||||||||| ||||||||||||||||||         |||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  181526 aaatttggaacgaataccacactgaagatacgttt--ttttcttctcctttagtgaaagaatatttgcatcaaaaatataatattccctttcaaa 181434  T

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Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 11701364 - 11701447
Alignment:
Q  111 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 197  Q
    |||||||||||| ||||||||||| |||||| || |||   ||||| |||||||||||||||| || ||||||||||||||||||||    
T  11701364 aatattccctttaaaaatatatttacatcaattcttcc---atacggtacaaaaatatatttactgaccataaatatattttcagca 11701447  T

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Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 13986214 - 13986285
Alignment:
Q  123 caaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 194  Q
    |||||||||||||||||||||| || ||||| || ||||||||| |||| | | ||||||||||||||||||    
T  13986214 caaaatatatttgcatcaaatcttctttcatgcggtacaaaaatttattaactatccataaatatattttca 13986285  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 13986328 - 13986374
Alignment:
Q  221 tttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    |||||||||||||||||||| |||||| ||||| |||||||||||||    
T  13986328 tttatatttttagcaacaatcttcttcatccataaaattttgagtca 13986374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 11701435 - 11701479
Alignment:
Q  223 tatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||    
T  11701435 tatattttcagcaacaatcttcttcgtccatcaaattttgagtca 11701479  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 30679208 - 30679256
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    |||||| |||||||| ||||| |||||||| |||||||||||||||||||    
T  30679208 tcttttttatttttaccaaca-tattcttcatccatcaaattttgagtca 30679256  T

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Target: scaffold0154 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 11819 - 12059
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11819 aaatttggaacgaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 11915  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||       | ||||||||||||    
T  11916 tttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaattttttatattttt 12015  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | ||||||||||||||| |||||||||||    
T  12016 agcaacaatattctccatccatcaaattttgaatcatactacaa 12059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 79127 - 78885
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatata 131  Q
    |||||||||||||||| |||||||||||||| |||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  79127 aaatttggaacgaataccacactgaagatacattt-tttttttcctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatata 79029  T
Q  132 tttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattttt 231  Q
    ||||||||||||||| ||||||||  |||||||||||||||||| |||||||||||||||| |||| ||||||| ||||       ||||||||||||||    
T  79028 tttgcatcaaatcgttcttcatacagtacaaaaatatatttattatccataaatatatttttagcagaaaatatatttgagacaaatcttttatattttt 78929  T
Q  232 agcaacaatattcttcttccatcaaattttgagtcatactacaa 275  Q
    |||||||||||||| | ||||||||||||| |||||||||||||    
T  78928 agcaacaatattctccatccatcaaattttaagtcatactacaa 78885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 129 - 282
Target Start/End: Complemental strand, 4694 - 4541
Alignment:
Q  129 atatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatt 228  Q
    ||||||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||| || |       |||||||||||    
T  4694 atatttgcatcaaattgtccttcatacagtacaaaaatatatatattgtccataaatatattttcagcacgaaatatattcgaaacaaatcttttatatt 4595  T
Q  229 tttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctc 282  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||    
T  4594 tttagcaacaatattcttcatccatcaaattttgagttatactgcaacattctc 4541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 4757 - 4722
Alignment:
Q  32 aaatttggaacgaatatcacactgaagatacgtttc 67  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4757 aaatttgaaacgaatatcacactgaagatacgtttc 4722  T

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Target: scaffold1674 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 1 - 127
Alignment:
Q  183 aatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctc 282  Q
    ||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  1 aatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacattctc 100  T
Q  283 aaccttgactccaaattagtgatgatg 309  Q
     |||||||||| |||||||||||||||    
T  101 caccttgactctaaattagtgatgatg 127  T

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Target: scaffold0468 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 2070 - 2183
Alignment:
Q  162 aaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaatttt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||    
T  2070 aaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttt 2169  T
Q  262 gagtcatactacaa 275  Q
    ||||||||||||||    
T  2170 gagtcatactacaa 2183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 2022 - 2080
Alignment:
Q  76 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatattt 134  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  2022 ctccttcagtgaaagaatatttgcatcaaaaatataatattctctttcaaaatatattt 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 57836 - 57905
Alignment:
Q  124 aaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 194  Q
    ||||||||||||||||||||  || |||||||| |||||||||||||||||||| |||| |||||||||||    
T  57836 aaaatatatttgcatcaaattttc-ttcatacggtacaaaaatatatttattgttcatacatatattttca 57905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 1971 - 2018
Alignment:
Q  126 aatatatttgcatcaaatcgtccttcatacgatacaaaaatatattta 173  Q
    |||||||||| |||||||  ||||||||| ||||||||||||||||||    
T  1971 aatatatttgtatcaaatattccttcatatgatacaaaaatatattta 2018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 10492 - 10443
Alignment:
Q  218 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 267  Q
    ||||||||||||||| ||||||| || ||  |||||||||||||||||||    
T  10492 tcttttatatttttaacaacaatcttttttatccatcaaattttgagtca 10443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 35579 - 35547
Alignment:
Q  279 tctcaaccttgactccaaattagtgatgatgtc 311  Q
    |||| ||||||||||||||||||||||||||||    
T  35579 tctccaccttgactccaaattagtgatgatgtc 35547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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