View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17925_high_2 (Length: 527)
Name: NF17925_high_2
Description: NF17925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17925_high_2 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 63 - 451
Target Start/End: Original strand, 23348413 - 23348801
Alignment:
| Q |
63 |
acacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348413 |
acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat |
23348512 |
T |
|
| Q |
163 |
ataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacg |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23348513 |
gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg |
23348612 |
T |
|
| Q |
263 |
acaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaattttgt |
362 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23348613 |
acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgt |
23348712 |
T |
|
| Q |
363 |
ttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctgaattccaacacataa |
451 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
23348713 |
ttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataa |
23348801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 27 - 451
Target Start/End: Complemental strand, 12742414 - 12741988
Alignment:
| Q |
27 |
catcaatggacatattggtgtgtttgnnnnnnnnntacacat--gattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctat |
124 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12742414 |
catcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat |
12742315 |
T |
|
| Q |
125 |
ttaaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtag |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12742314 |
ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtag |
12742215 |
T |
|
| Q |
225 |
catcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagct |
324 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12742214 |
catcttcaacacaccttgctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagct |
12742115 |
T |
|
| Q |
325 |
gcggcgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagt |
424 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12742114 |
gcggcggcggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagt |
12742015 |
T |
|
| Q |
425 |
taaaacaatctgaattccaacacataa |
451 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
12742014 |
aaaagcaatctgaattccaacacataa |
12741988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 67 - 451
Target Start/End: Original strand, 18354744 - 18355134
Alignment:
| Q |
67 |
atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18354744 |
atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
18354843 |
T |
|
| Q |
167 |
tggaataacaaagttagggaaaagttacaagaacaacgatttaggatat------atatagtagcatcttcaacacacctggctaatacgatgccgcaga |
260 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| || |||||| |||||||| |
|
|
| T |
18354844 |
tggaataacaaagttagggaaaagctacaggaacaacgatttaggatatatatatatatagtagcatcttcaacacacctgactgatacgacgccgcaga |
18354943 |
T |
|
| Q |
261 |
cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaatttt |
360 |
Q |
| |
|
| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18354944 |
caacaacagcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaatttt |
18355043 |
T |
|
| Q |
361 |
gtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctgaattccaacacataa |
451 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
18355044 |
gtttgaatgtctgagagtgagatggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataa |
18355134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 27 - 230
Target Start/End: Original strand, 10328422 - 10328627
Alignment:
| Q |
27 |
catcaatggacatattggtgtgtttgnnnnnnnnntacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctattt |
126 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10328422 |
catcaatggacatattggtgtgtttgaaaaaaaaatacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctattt |
10328521 |
T |
|
| Q |
127 |
aaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttagg--atatatatagtag |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |
|
|
| T |
10328522 |
aaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagatacatgaacaacgatttaggatatatatatagtag |
10328621 |
T |
|
| Q |
225 |
catctt |
230 |
Q |
| |
|
|||||| |
|
|
| T |
10328622 |
catctt |
10328627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 359 - 451
Target Start/End: Original strand, 10328626 - 10328718
Alignment:
| Q |
359 |
ttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctgaattccaacacataa |
451 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
10328626 |
ttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctaaattccaacacataa |
10328718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 67 - 451
Target Start/End: Original strand, 43070819 - 43071203
Alignment:
| Q |
67 |
atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43070819 |
atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
43070918 |
T |
|
| Q |
167 |
tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43070919 |
tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacgacaa |
43071018 |
T |
|
| Q |
267 |
cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaattttgtttga |
366 |
Q |
| |
|
|| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43071019 |
cggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttga |
43071118 |
T |
|
| Q |
367 |
atgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctgaattccaacacataa |
451 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
43071119 |
atgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataa |
43071203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 239 - 451
Target Start/End: Complemental strand, 1262601 - 1262389
Alignment:
| Q |
239 |
ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagag |
338 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1262601 |
ctggctgatacgatgccgcatacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagaa |
1262502 |
T |
|
| Q |
339 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctgaa |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||| |||| |||| |
|
|
| T |
1262501 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttcgagtaaaagcaatatgaa |
1262402 |
T |
|
| Q |
439 |
ttccaacacataa |
451 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1262401 |
ttccaacacataa |
1262389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 239 - 433
Target Start/End: Original strand, 48849391 - 48849585
Alignment:
| Q |
239 |
ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagag |
338 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
48849391 |
ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgaaaggagagagctgcggcgacggagaa |
48849490 |
T |
|
| Q |
339 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaat |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
48849491 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaat |
48849585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 451
Target Start/End: Original strand, 48849586 - 48849627
Alignment:
| Q |
410 |
gagaattttttgagttaaaacaatctgaattccaacacataa |
451 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
48849586 |
gagatttttttgagtaaaagcaatctgaattccaacacataa |
48849627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 27 - 451
Target Start/End: Complemental strand, 1378 - 954
Alignment:
| Q |
27 |
catcaatggacatattggtgtgtttgnnnnnnnnntacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctattt |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1378 |
catcaatggacatattggtgtgtttgaaaaaaaaatacacatgattttaaaatatcaatcaatttattaacagcataatacatgatggtaaaatctattt |
1279 |
T |
|
| Q |
127 |
aaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagca |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1278 |
aaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagca |
1179 |
T |
|
| Q |
227 |
tcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgc |
326 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1178 |
tcttcaacacacctggctgatacgatgccgcagacgacaacggcgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgc |
1079 |
T |
|
| Q |
327 |
ggcgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagtta |
426 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| | |
|
|
| T |
1078 |
ggcgacggagagagcggcaacggcagagaattttgtttaaatgtctgagagtgaggtggaagatgaacaactcaaagggagaagagatttttttgagtaa |
979 |
T |
|
| Q |
427 |
aaacaatctgaattccaacacataa |
451 |
Q |
| |
|
|| |||| ||||||||||||||||| |
|
|
| T |
978 |
aagcaatttgaattccaacacataa |
954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 63 - 451
Target Start/End: Original strand, 19881544 - 19881932
Alignment:
| Q |
63 |
acacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19881544 |
acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat |
19881643 |
T |
|
| Q |
163 |
ataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacg |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19881644 |
gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg |
19881743 |
T |
|
| Q |
263 |
acaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaattttgt |
362 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||||||||||| ||||||||||||| |
|
|
| T |
19881744 |
acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgaggacaggagagagctgcggtgacggagagagcggcaacgacagagaattttgt |
19881843 |
T |
|
| Q |
363 |
ttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctgaattccaacacataa |
451 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
19881844 |
ttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctgaattccaacacataa |
19881932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 27 - 451
Target Start/End: Original strand, 53972682 - 53973107
Alignment:
| Q |
27 |
catcaatggacatattggtgtgtttgnnnnnnnnn-tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatt |
125 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53972682 |
catcaatggacatattggtgtgtttgaaaaaaaaaatacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatt |
53972781 |
T |
|
| Q |
126 |
taaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagc |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53972782 |
taaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagc |
53972881 |
T |
|
| Q |
226 |
atcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctg |
325 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53972882 |
atcttcaacacacttggctgatacgatgccgcagacgacaacgacgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctg |
53972981 |
T |
|
| Q |
326 |
cggcgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagtt |
425 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
53972982 |
cggcgacggagagagcggcaacgacagagaattttgtttaaatgtctgagagtgaggtggaagatgaacaactcaaagggagaagagatttttttgagta |
53973081 |
T |
|
| Q |
426 |
aaaacaatctgaattccaacacataa |
451 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
53973082 |
aaagcaatctgaattccaacacataa |
53973107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 212 - 451
Target Start/End: Complemental strand, 37982891 - 37982652
Alignment:
| Q |
212 |
atatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacg |
311 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
37982891 |
atatatatattagcatcttcaacacacctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacg |
37982792 |
T |
|
| Q |
312 |
acaggagagagctgcggcgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaaga |
411 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
37982791 |
ataggagagagctgcggcgacggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcagagggcgaaga |
37982692 |
T |
|
| Q |
412 |
gaattttttgagttaaaacaatctgaattccaacacataa |
451 |
Q |
| |
|
|| |||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
37982691 |
gatttttttgagtaaaagcaatctgaattccaaaacataa |
37982652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 62 - 220
Target Start/End: Complemental strand, 37983097 - 37982939
Alignment:
| Q |
62 |
tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37983097 |
tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa |
37982998 |
T |
|
| Q |
162 |
tataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatata |
220 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37982997 |
tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatata |
37982939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 239 - 451
Target Start/End: Complemental strand, 31685575 - 31685377
Alignment:
| Q |
239 |
ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagag |
338 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||| ||| ||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31685575 |
ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgatatcattggtgaagggcgacgacaggagagagctgcggc--------- |
31685485 |
T |
|
| Q |
339 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagaga-attttttgagttaaaacaatctga |
437 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||| ||| |
|
|
| T |
31685484 |
------aacggcatataattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttttgagtaaaagcaatttga |
31685391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 440 - 495
Target Start/End: Complemental strand, 43806836 - 43806781
Alignment:
| Q |
440 |
tccaacacataatatatcataccaatgaagaaaacaagcaattctgcgtcacatct |
495 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43806836 |
tccaaaacatattatatcataccaatgaagaaaacaagcaattctgcgtcacatct |
43806781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 17682246 - 17682201
Alignment:
| Q |
261 |
cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaaggg |
306 |
Q |
| |
|
|||||||| | ||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
17682246 |
cgacaacggcaaaggtgatgtcggaatcgagagcattggtgaaggg |
17682201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 19766488 - 19766443
Alignment:
| Q |
261 |
cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaaggg |
306 |
Q |
| |
|
|||||||| ||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
19766488 |
cgacaacggcgaaggtgatgtcggaatctagagcattggtgaaggg |
19766443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 67 - 451
Target Start/End: Complemental strand, 9044486 - 9044102
Alignment:
| Q |
67 |
atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9044486 |
atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
9044387 |
T |
|
| Q |
167 |
tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
9044386 |
tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacttggctgatacgatgctgcagacgacaa |
9044287 |
T |
|
| Q |
267 |
cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaattttgtttga |
366 |
Q |
| |
|
|| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9044286 |
cgacgaaggtgatgtcgaaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttga |
9044187 |
T |
|
| Q |
367 |
atgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctgaattccaacacataa |
451 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
9044186 |
atgtctgagagtgaggtggaagatgaacaactcaaagggcgaagaaatttttttgagtaaaagcaatctgaattccaacacataa |
9044102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 27 - 451
Target Start/End: Original strand, 7472880 - 7473310
Alignment:
| Q |
27 |
catcaatggacatattggtgtgtttgnnnnnnnnntacacat--gattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctat |
124 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7472880 |
catcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat |
7472979 |
T |
|
| Q |
125 |
ttaaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatat----atata |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
7472980 |
ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatatata |
7473079 |
T |
|
| Q |
221 |
gtagcatcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagag |
320 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7473080 |
gtagcatcttcaacacacctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagag |
7473179 |
T |
|
| Q |
321 |
agctgcggcgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaatttttt |
420 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
7473180 |
agctgcggcgacggagagagcgacaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttt |
7473279 |
T |
|
| Q |
421 |
gagttaaaacaatctgaattccaacacataa |
451 |
Q |
| |
|
|||| ||| |||||| ||||||||||||||| |
|
|
| T |
7473280 |
gagtaaaagcaatctaaattccaacacataa |
7473310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 67 - 451
Target Start/End: Original strand, 30441983 - 30442368
Alignment:
| Q |
67 |
atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30441983 |
atgattttaaagtatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
30442082 |
T |
|
| Q |
167 |
tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
30442083 |
tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacatatggctgatacgatgccgcagacgacaa |
30442182 |
T |
|
| Q |
267 |
cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaattttgtttga |
366 |
Q |
| |
|
|| | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |
|
|
| T |
30442183 |
cggccaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcaacggagagagcggcaacgacagagaattttgtttga |
30442282 |
T |
|
| Q |
367 |
atgtctgagagtgaggtggaggatgaacaactcaaagggcgaagaga-attttttgagttaaaacaatctgaattccaacacataa |
451 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
30442283 |
atgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttttgagtaaaagcaatctgaattccaacacataa |
30442368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 40163996 - 40163917
Alignment:
| Q |
101 |
ataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttag |
183 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||| |||||| | ||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
40163996 |
ataatacataattgtaaaatctatgtaaatatca---attcacatccaaacaaactaaatatataatggaataacaaagttag |
40163917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 5e-79; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 238 - 451
Target Start/End: Original strand, 14677630 - 14677843
Alignment:
| Q |
238 |
cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga |
337 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
14677630 |
cctggctgatacgatgctgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgacgataggagagagctgcggcgacggaga |
14677729 |
T |
|
| Q |
338 |
gagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctga |
437 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| ||| |||||||| |
|
|
| T |
14677730 |
gagcggcaacggcagaggattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaagagatttttttgagtaaaagcaatctga |
14677829 |
T |
|
| Q |
438 |
attccaacacataa |
451 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
14677830 |
atttcaacacataa |
14677843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 246 - 451
Target Start/End: Original strand, 31100488 - 31100693
Alignment:
| Q |
246 |
atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggca |
345 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
31100488 |
atacgatgccacagacgacaacggcgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagttgcggcgacggagagagtggcg |
31100587 |
T |
|
| Q |
346 |
acggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctgaattccaac |
445 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
31100588 |
acggcaaagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctgaattccaac |
31100687 |
T |
|
| Q |
446 |
acataa |
451 |
Q |
| |
|
|||||| |
|
|
| T |
31100688 |
acataa |
31100693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 246 - 451
Target Start/End: Complemental strand, 5658261 - 5658071
Alignment:
| Q |
246 |
atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggca |
345 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5658261 |
atacgatgccacagacgacaacggcgaaggtgatgttggaatcaagagcattggtgaagggcgacgacaggagagagctgcggcgac------------- |
5658175 |
T |
|
| Q |
346 |
acggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctgaattccaac |
445 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
5658174 |
--ggcaaagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctgaattccaac |
5658077 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 310 - 444
Target Start/End: Original strand, 33688978 - 33689112
Alignment:
| Q |
310 |
cgacaggagagagctgcggcgacagagagagcggcaacggcagagaatt-ttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcga |
408 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| | || |||||| | |||||||||||||| ||||||||||||| |||||||||||||||||| || |
|
|
| T |
33688978 |
cgacatgagagagctgcggcgacggagagagcggcgatgggagagaagtcttgtttgaatgtctaagagtgaggtggaagatgaacaactcaaaggg-ga |
33689076 |
T |
|
| Q |
409 |
agagaattttttgagttaaaacaatctgaattccaa |
444 |
Q |
| |
|
||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
33689077 |
agagatttttttgagtaaaagcaatctgaattccaa |
33689112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 238 - 451
Target Start/End: Complemental strand, 35574 - 35361
Alignment:
| Q |
238 |
cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga |
337 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||| |||| |
|
|
| T |
35574 |
cctggctgatacgatgccgcaaacgacaacggcgaaggtgatgtcagaatcgagagcatcggtcaaaggcgacgacaggagagagctgcggcgacggaga |
35475 |
T |
|
| Q |
338 |
gagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctga |
437 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || || |||||||||| ||| |||||||| |
|
|
| T |
35474 |
gagcagcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaaacgatttttttgagtaaaagcaatctga |
35375 |
T |
|
| Q |
438 |
attccaacacataa |
451 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
35374 |
attccaactcataa |
35361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 238 - 451
Target Start/End: Original strand, 29862969 - 29863182
Alignment:
| Q |
238 |
cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga |
337 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| | || |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29862969 |
cctggctgatacgatgccgcagatgacaacggcaaaagtgatgtcggaatcgagagcatcggtgaagggcgacgacaggagagagctgcggcgacggaga |
29863068 |
T |
|
| Q |
338 |
gagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctga |
437 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| ||| |||||||| |
|
|
| T |
29863069 |
gagcggcagcgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaagagatttttttgagtaaaagcaatctga |
29863168 |
T |
|
| Q |
438 |
attccaacacataa |
451 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
29863169 |
attctaacacataa |
29863182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 238 - 451
Target Start/End: Original strand, 11242 - 11455
Alignment:
| Q |
238 |
cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga |
337 |
Q |
| |
|
||||||| || | |||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
11242 |
cctggctgatgcaatgccgcagacgacaacggcgaaggtgatgtcggattcgagagcattggtgaagggcgacgacaagagagagctgcggcgacggaga |
11341 |
T |
|
| Q |
338 |
gagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctga |
437 |
Q |
| |
|
|||||| || || ||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| || || ||||||| ||| |||||||| |
|
|
| T |
11342 |
gagcggtgacaacaaagaattttgtttgaatgtctgggagtgaggtggaagatgaacaactcaaagggggaagggatttgtttgagtaaaagcaatctga |
11441 |
T |
|
| Q |
438 |
attccaacacataa |
451 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11442 |
attccaacacataa |
11455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 246 - 451
Target Start/End: Original strand, 33045062 - 33045252
Alignment:
| Q |
246 |
atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggca |
345 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33045062 |
atacgatgccgcagacgacaacgacgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac------------- |
33045148 |
T |
|
| Q |
346 |
acggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctgaattccaac |
445 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
33045149 |
--gacaaagaattttgtttgaatgtctgagagtgaggttgaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctgaattccaac |
33045246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 305 - 443
Target Start/End: Original strand, 22000988 - 22001126
Alignment:
| Q |
305 |
ggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
22000988 |
ggcgacgacaggagagagctgcggcgacggagagagcggcaacgacagagaattttgtttgaatgtctgaaagtgaggtggaagatgaacaactcaaagg |
22001087 |
T |
|
| Q |
405 |
gcgaagagaattttttgagttaaaacaatctgaattcca |
443 |
Q |
| |
|
| ||||||| |||||||||| ||| |||| | ||||||| |
|
|
| T |
22001088 |
gggaagagatttttttgagtaaaagcaatataaattcca |
22001126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 238 - 451
Target Start/End: Complemental strand, 10092985 - 10092793
Alignment:
| Q |
238 |
cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga |
337 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10092985 |
cctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacag-------------------aga |
10092905 |
T |
|
| Q |
338 |
gagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaggatgaacaactcaaagggcgaagagaattttttgagttaaaacaatctga |
437 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||| ||| |||| ||| |
|
|
| T |
10092904 |
gagcggcgacgttagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaacttaaagg--gaagagatttttttgagtaaaagcaatttga |
10092807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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