View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17925_high_3 (Length: 479)
Name: NF17925_high_3
Description: NF17925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17925_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 468
Target Start/End: Original strand, 37443889 - 37444331
Alignment:
| Q |
10 |
caatgtatctccatctacagagggatacttcattgaaaggatgaagcagatatagaaagggaggggaaaggaaaataaaaacattgtaactagtggaata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37443889 |
caatgtatctccatctacagagggatacttcattgaaaggatgaagcagatatagaaagggaggggtaaggaaaataaaaacattgtaactagtggaata |
37443988 |
T |
|
| Q |
110 |
ctatgaagcaccgtctacgcgagggaatatggcagatcgcac--aatgagataagcgctttttagtgttcaaatacacacatattgatacattttctact |
207 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37443989 |
ctatgaagcaccgtctacgcgagggcatatggaagagcttactaaatgagataagcgctttttagtgttcaaatacacacatattgata----------- |
37444077 |
T |
|
| Q |
208 |
tatttcagtaagctttccaaaaatagcttataattttggttcaaaattggtttcactcactctaccctctcttttgcaccatcgctcactcaatcctcct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37444078 |
-------gtaagctttccaaaaatagcttataattttggttcaaaattggtttcactcactctaccctctcttttgcaccatcgctcactcaatcctcct |
37444170 |
T |
|
| Q |
308 |
tttaacaacagttaccctagctaagtcaatgtttttaaacaagtaatttgtcaaaccctcgctgctaatattaaaaatgttcctcacactctcagaccaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37444171 |
tttaacaacagttaccctagctaagtcaatgtttttaaacaagtaatttgtcaaaccctcactgctaatattaaaaatgttcctcacactctcagaccaa |
37444270 |
T |
|
| Q |
408 |
aatataaagcattaataatttccattgaaaaacaacaaaaaagcacaacaatcttgaagtc |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37444271 |
aatataaagcattaataatttccattgaaaaacaacaaaaaagcacaacaatcttgaagtc |
37444331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 186 - 339
Target Start/End: Complemental strand, 7492676 - 7492522
Alignment:
| Q |
186 |
acatattgatacattttctacttatttcagtaagctttccaaaaa-----tagcttataattttggttcaaaattggtttcactcactctaccctctctt |
280 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||||||||||| |||| |||||||| |||||||||||||||||| || || |||||||| |
|
|
| T |
7492676 |
acatattgataatttttctacttaattcaataagctttccaaaatactactagcctataatttaggttcaaaattggtttcattc----tatcctctctt |
7492581 |
T |
|
| Q |
281 |
ttgcaccatcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatgt |
339 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| || | |||| |||||||||| |
|
|
| T |
7492580 |
ttgcaccattgctcactcaatcctccttttaacaacagctatcttagccaagtcaatgt |
7492522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University