View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17925_high_4 (Length: 466)
Name: NF17925_high_4
Description: NF17925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17925_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 28 - 445
Target Start/End: Complemental strand, 8897325 - 8896915
Alignment:
| Q |
28 |
cagtcatggctcagtatgaacaacttggactctcagctgataatgttttccatcacatgttgactcctaaatcaaattgccaaaaagagagctctccctt |
127 |
Q |
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| T |
8897325 |
cagtcatggctcagtatgaacaacttggactctcagctgataatgttttccatcacatgttgactcctaaatcaaattgccaaaaagagagctctccctt |
8897226 |
T |
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| Q |
128 |
tccatcaagttcctcctcccagtccaatcctgaaagtctaggagcaatgagatggacatcatcataattgctgttatgacgctaactacagttttcacaa |
227 |
Q |
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| T |
8897225 |
tccatcaagttcctcctcccagtccaatcctgaaagtc----acaattcaga---acatgatcataattgctgttatgacgctaactacagttttcacaa |
8897133 |
T |
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| Q |
228 |
ccaaaaccttgctnnnnnnnctgatttggatcatgcagtgcatgattctcctagtgctggtcagggttttggcaatgacttttgtcatgcttcaaatcat |
327 |
Q |
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| T |
8897132 |
ccaaaaccttactgaaaaaactgatttggatcatgcagtgcatgattctcctagtgctggtcagggttttggcaatgacttttgtcatgcttcaaatcat |
8897033 |
T |
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| Q |
328 |
attaatagttgtggcaatgttggagaggttatttcaaatgcggttactaagaattcaagaacttctagtgatggtaggcgctatagtcatagtaattatg |
427 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8897032 |
attaatagtcgtggcaatgttggagaggctatttcaaatgcggttactaagaattcaagaacttctagtgatggtaggcgctataatcatagtaattatg |
8896933 |
T |
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| Q |
428 |
attatgattgtgatgatg |
445 |
Q |
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| T |
8896932 |
attatgattgtgatgatg |
8896915 |
T |
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