View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17925_high_8 (Length: 363)
Name: NF17925_high_8
Description: NF17925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17925_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 77 - 350
Target Start/End: Original strand, 14812581 - 14812852
Alignment:
| Q |
77 |
acatcatcaccttgtcaagaataatttccacactacttcgttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
176 |
Q |
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| T |
14812581 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
14812680 |
T |
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| Q |
177 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatatcatacttatctt |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
14812681 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatac--tatcatatttatctt |
14812778 |
T |
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| Q |
277 |
tcatgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812779 |
tcatgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
14812852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 77 - 350
Target Start/End: Original strand, 15259576 - 15259847
Alignment:
| Q |
77 |
acatcatcaccttgtcaagaataatttccacactacttcgttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
176 |
Q |
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||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259576 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
15259675 |
T |
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| Q |
177 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatatcatacttatctt |
276 |
Q |
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| T |
15259676 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatac--tatcatatttatctt |
15259773 |
T |
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| Q |
277 |
tcatgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259774 |
tcatgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
15259847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 77 - 350
Target Start/End: Complemental strand, 17521599 - 17521328
Alignment:
| Q |
77 |
acatcatcaccttgtcaagaataatttccacactacttcgttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
176 |
Q |
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|||||| |||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521599 |
acatcaccaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
17521500 |
T |
|
| Q |
177 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatatcatacttatctt |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
17521499 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatac--tatcatatttatctt |
17521402 |
T |
|
| Q |
277 |
tcatgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521401 |
tcatgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
17521328 |
T |
|
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