View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17925_low_1 (Length: 332)
Name: NF17925_low_1
Description: NF17925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17925_low_1 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0164 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 102 - 332
Target Start/End: Original strand, 10208646 - 10208866
Alignment:
| Q |
102 |
gatcgtaatgagtggaattagaaacacgtacattatacatgcactcttgttttcattttttgagtttgagtcatgtctttgaatttattgagaaattgag |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10208646 |
gatcgtaatgagtggaattagaaacacgtacattatacatgcactcttgttttcattttttgagtttgagtcatgtctttgaatttattgagaaattgag |
10208745 |
T |
|
| Q |
202 |
agccatgggaacattaatgaaccgtttttgctcgctcaaagtaacatcgcaacaattacaaacaacatcaacactaaagaagaagaaagtatatttgatt |
301 |
Q |
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||||| ||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10208746 |
agccacgggaacattaatgaaccgtttttgctcgctcaaccta----------agtaacaaacaacatcaacactaaagaggaagaaagtatatttgatt |
10208835 |
T |
|
| Q |
302 |
attgaaaaacctttttatacctaattaggac |
332 |
Q |
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|||||||||| |||||||||||||||||||| |
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| T |
10208836 |
attgaaaaacatttttatacctaattaggac |
10208866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 10208566 - 10208606
Alignment:
| Q |
25 |
tcaaggaatattgtgagaaacatggaagacatgatgattac |
65 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |
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| T |
10208566 |
tcaaggaatattgtgagaaacatgaaagacatgatgattac |
10208606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 121 - 332
Target Start/End: Original strand, 33358375 - 33358597
Alignment:
| Q |
121 |
agaaacacgtacattatacatgcactcttgttttcattttttgagtttgagtcatgtctttgaatttattgagaaattgagagccatgggaa-------- |
212 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
33358375 |
agaaacacgtacatcatacatgcactcttgtttttattttttgagtttgagtcatgtctttgaatttattgagaaattgagagcaacgggaagtcgggaa |
33358474 |
T |
|
| Q |
213 |
cattaatgaaccgtttttgctcgctcaa----agtaacatcgcaacaattacaaacaacatcaacactaaagaagaagaaagtatatttgattattgaaa |
308 |
Q |
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||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
33358475 |
cattagtgaaccgtctttgctcgctcaacctgagtaacatcacaacaattacaaacaacatcatcactaaagaagaagaaagtatatttgattatt-taa |
33358573 |
T |
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| Q |
309 |
aacctttttatacctaattaggac |
332 |
Q |
| |
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||| |||||||||||||||||||| |
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|
| T |
33358574 |
aacatttttatacctaattaggac |
33358597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 33358243 - 33358283
Alignment:
| Q |
25 |
tcaaggaatattgtgagaaacatggaagacatgatgattac |
65 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||| |
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| T |
33358243 |
tcaaggaatattgtgagaaacatgaaagacatgacgattac |
33358283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 167 - 332
Target Start/End: Complemental strand, 48118171 - 48118002
Alignment:
| Q |
167 |
ttgagtcatgtctttgaatttattgagaaattgagagccatgggaacattaatgaaccgtttttgctcgctcaa----agtaacatcgcaacaattacaa |
262 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
48118171 |
ttgagtcatgtcttagaatttattgagaaattgagagccacgggaacattagtgaaccgtctttgctcgctcaacctgagtaacatcgcaacaattacaa |
48118072 |
T |
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| Q |
263 |
acaacatcaacactaaagaagaagaaagtatatttgattattgaaaaacctttttatacctaattaggac |
332 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
48118071 |
acaacatcaacactaaagaagaagaaagtatatttgattattgaagaacatttttatacctaattaggac |
48118002 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 48118279 - 48118239
Alignment:
| Q |
25 |
tcaaggaatattgtgagaaacatggaagacatgatgattac |
65 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
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| T |
48118279 |
tcaaggaatattgtgagaaacatgaaagacatgatgattac |
48118239 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 132
Target Start/End: Complemental strand, 48118205 - 48118175
Alignment:
| Q |
102 |
gatcgtaatgagtggaattagaaacacgtac |
132 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
48118205 |
gatcgtaatgagtggaattagaaacacgtac |
48118175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 177 - 289
Target Start/End: Original strand, 18700071 - 18700185
Alignment:
| Q |
177 |
tctttgaatttattgagaaattgagagccatgggaacattaatgaaccgtttttgctcgctcaa----agtaacatcgcaacaattacaaacaacatcaa |
272 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| |||||| | ||||||| |||||||||||||||||||||| |
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| T |
18700071 |
tctttgaatttattgagaaattgagt--catgggaacattagtgaaccgtctttgcttgctcaacctgaataacatcacaacaattacaaacaacatcaa |
18700168 |
T |
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| Q |
273 |
cactaaagaagaagaaa |
289 |
Q |
| |
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||||||||||||||||| |
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| T |
18700169 |
cactaaagaagaagaaa |
18700185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 148 - 332
Target Start/End: Complemental strand, 8891044 - 8890857
Alignment:
| Q |
148 |
ttgttttcattttttgagtttgagtcatgtctttgaatttattgagaaattgagagccatgggaacattaatgaaccgtttttgctcgctcaaagtaaca |
247 |
Q |
| |
|
||||||| ||| ||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||| |||| ||| || ||| | | ||||| |
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| T |
8891044 |
ttgtttttattctttgagtttgagtattgtctttgaattttttgagaaatcaagagccacaggaacattagtgaatcgtcattactcatcctgaataaca |
8890945 |
T |
|
| Q |
248 |
tcgcaacaattacaaacaacatcaacactaaagaaga---agaaagtatatttgattattgaaaaacctttttatacctaattaggac |
332 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||| |||||||||| |
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| T |
8890944 |
tcacaacaattacaaacaaattcaacactaaagaagaagtagaaagtatatttgattattgaaaaatatttatatagataattaggac |
8890857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 18700025 - 18700071
Alignment:
| Q |
102 |
gatcgtaatgagtggaattagaaacacgtacattatacatgcactct |
148 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| |||||||||||| |
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| T |
18700025 |
gatcataaagagtggaattagaaacacgtacatcctacatgcactct |
18700071 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 289
Target Start/End: Original strand, 12262 - 12376
Alignment:
| Q |
177 |
tctttgaatttattgagaaattgagagccatgggaacattaatgaaccgtttttgctcgctcaa----agtaacatcgcaacaattacaaacaacatcaa |
272 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||||||| | ||||||| |||||||||| || |||||||| |
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|
| T |
12262 |
tctttgaatttattgagaaattgagt--catgggaacattagtgaattgtctttgctcgctcaacctgaataacatcacaacaattacgaaaaacatcaa |
12359 |
T |
|
| Q |
273 |
cactaaagaagaagaaa |
289 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12360 |
cactaaagaagaagaaa |
12376 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 332
Target Start/End: Original strand, 40883480 - 40883664
Alignment:
| Q |
151 |
ttttcattttttgagtttgagtcatgtctttgaatttattgagaaattgagagccatgggaacattaatgaaccgtttttgctcgctcaaagtaacatcg |
250 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||||||| ||||||||| ||||||| | ||||| | |||||||| |||||| | | ||| ||| |
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|
| T |
40883480 |
tttttattctttgagtttgagtattgtctttgaattttttgagaaatcaagagccacagaaacatcagtgaaccgtcattgctcaacctgaataaaatca |
40883579 |
T |
|
| Q |
251 |
caacaattacaaacaacatcaacactaaagaagaag---aaagtatatttgattattgaaaaacctttttatacctaattaggac |
332 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
40883580 |
caacaattacaaataaattcaacactaaagaagaagtagaaagtatatttgattattgaaaaatatttatatagataattaggac |
40883664 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 51035204 - 51035307
Alignment:
| Q |
102 |
gatcgtaatgagtggaattagaaacacgtacattatacatgcact---cttgttttcattttttgagtttgagtcatgtctttgaatttattgagaaatt |
198 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| |||||||||| ||||||| | |||||||||| |||| | |||||||||||||||||||||| |
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|
| T |
51035204 |
gatcataaagagtggaattagaaacacgtacatcctacatgcactttctttgtttt--tattttgagttttagtcctatctttgaatttattgagaaatt |
51035301 |
T |
|
| Q |
199 |
gagagc |
204 |
Q |
| |
|
|||||| |
|
|
| T |
51035302 |
gagagc |
51035307 |
T |
|
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