View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17926_low_1 (Length: 480)
Name: NF17926_low_1
Description: NF17926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17926_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 22012743 - 22013193
Alignment:
| Q |
18 |
acaaagttcgtctattacaatatgtaccaacattagtcaactgaagaaaaacttaagaatttaaatagaatactttattttaataagattaccttgtacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22012743 |
acaaagttcgtctattacaatatgtaccaacattagtcaactgaagaaaaacttaagaatttaaatagaatactttattttaataagattaccttgtacc |
22012842 |
T |
|
| Q |
118 |
aagtcaaaggttgatttgtaggtaagtttgattgtgaattccactgtccaacatttccactagacagacctacaaattcaccttgaaggccaacctgcat |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22012843 |
aagtcaaaggttgatttgcaggtaagtttgattgtgaattccactgtccaacatttccactagacagacctacaaattcaccttgaaggccaacctgcat |
22012942 |
T |
|
| Q |
218 |
tcacaaaaatacagccaatgtaattaattcaccaaaactcaaaaggagaaacaaaaacaggccttaagtcaagccgagactaacctgatatgtccattgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22012943 |
tcacaaaaatacagccaatgtaattaattcaccaaaactcaaaaggagaaacaaaaacaggccttaagtgaagccgagactaacctgatatgtccattgc |
22013042 |
T |
|
| Q |
318 |
tgtgaggagagatcgacgctactgccatttttcaaacctttcaatattaccggaccagtgatccccgcacccactgtgtcataaaatgctccatagttct |
417 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22013043 |
tgtgaggtgagatcgacgctactgccatttttcaagcctttcaatattaccggaccagtgatccccgcacccactgtgtcataaaatgctccatagttct |
22013142 |
T |
|
| Q |
418 |
gtggcgtgtaaaattgacattaaccagatgatgcatattaaaaaccatgat |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22013143 |
gtggcgtgtaaaattgacattaaccagatgatgcatattaaaaaccatgat |
22013193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 40081084 - 40081006
Alignment:
| Q |
340 |
tgccatttttcaaacctttcaatattaccggaccagtgatccccgcacccactgtgtcataaaatgctccatagttctg |
418 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||| |||||||| || |||||||||||| |||| |||||||||||||| |
|
|
| T |
40081084 |
tgccattcttcaaacctttcaatatcacgggaccggtgatccctgctcccactgtgtcaaaaaaggctccatagttctg |
40081006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 40093387 - 40093309
Alignment:
| Q |
340 |
tgccatttttcaaacctttcaatattaccggaccagtgatccccgcacccactgtgtcataaaatgctccatagttctg |
418 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||| ||||||||||| ||| ||||||| |||| |||||||||||||| |
|
|
| T |
40093387 |
tgccattcttcaaacctttcaatatcactggaccggtgatccccgctccccatgtgtcaaaaaaagctccatagttctg |
40093309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 40062735 - 40062657
Alignment:
| Q |
340 |
tgccatttttcaaacctttcaatattaccggaccagtgatccccgcacccactgtgtcataaaatgctccatagttctg |
418 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||| ||||||||||| ||| | ||||| |||| |||||||||||||| |
|
|
| T |
40062735 |
tgccattcttcaaacctttcaatgttactggaccggtgatccccgctccccatctgtcaaaaaaagctccatagttctg |
40062657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University