View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17926_low_6 (Length: 332)
Name: NF17926_low_6
Description: NF17926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17926_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 39676000 - 39676315
Alignment:
| Q |
1 |
aacatgaaaaatagtcctaagaaaatctaagagactctgaaattatagacagatcctacgaaagaaaataagataatctaacacaaaattttgtaagata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39676000 |
aacatgaaaaatagtcctaagaaaatctaagagactctgaaattatagacagatcctacaaaagaaaataagataatctaacacaaaattttgtaagata |
39676099 |
T |
|
| Q |
101 |
ttgtatagtaagtttaagcttgttacaaatatacccttgaaaagagaaaacataacaatcgatgcaacggcttgaggtacaagattcatagaaatcttca |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39676100 |
ttgtatagtaagtttaagcttgttaca--tatacccttgaaaagagaaaacataacaatcgatgcaacgacttgaggtacaagattcatagaaatcttca |
39676197 |
T |
|
| Q |
201 |
acatttggtcttcttctagtgtcaccgcgacattcactccaaagaatcaagcaccacaatttcggaacaaacaaatggcaaaatagacaaaagtttaacc |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39676198 |
acatttggtcttcttctagtgtcaccgtgacattcactccaaagaatcaagcaccacaatttcggaacaaacaaatggcaaaatagacaaaagtttaacc |
39676297 |
T |
|
| Q |
301 |
a-ttaagtagaagcaact |
317 |
Q |
| |
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| |||||||||||||||| |
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| T |
39676298 |
atttaagtagaagcaact |
39676315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 30979892 - 30979847
Alignment:
| Q |
113 |
tttaagcttgttacaaatatacccttgaaaagagaaaacataacaa |
158 |
Q |
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||||| ||| |||||||||||||||| ||||||||||| ||||||| |
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| T |
30979892 |
tttaaactttttacaaatatacccttcaaaagagaaaatataacaa |
30979847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 23051 - 23013
Alignment:
| Q |
113 |
tttaagcttgttacaaatatacccttgaaaagagaaaac |
151 |
Q |
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||||| |||||||||||||||||||| |||||||||||| |
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| T |
23051 |
tttaaacttgttacaaatataccctttaaaagagaaaac |
23013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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