View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17926_low_9 (Length: 290)
Name: NF17926_low_9
Description: NF17926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17926_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 12243536 - 12243801
Alignment:
| Q |
10 |
attatactccacatggacataagaatccctataatatcctttttgacgtgaagtgagcatcaaagtagcaccagtgatggccaaaccagaagcaacaagc |
109 |
Q |
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| T |
12243536 |
attaaactccacatggacataagaatccctataatatcctttttgacgtgaagtgagcatcaaagtagcaccagtgatggccaaaccagaagcaacaagc |
12243635 |
T |
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| Q |
110 |
tccaaagcacgtgaccaaacaccactaccatctgccattatctgtaat--nnnnnnnnnttgtcaatgaatttcaagaaggatcatagataaggacaaca |
207 |
Q |
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| T |
12243636 |
ttcaaagcacgtgaccaaacaccactaccatctgccattatctgtaataaaaaaaaaaattgtcaatgaatttcaagaaggatcatagataaggacaaca |
12243735 |
T |
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| Q |
208 |
ttgaaataatattcacaagcaaattgtagagtacttcattgatttattcatgaataaattgaaaat |
273 |
Q |
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| T |
12243736 |
ttgaaataatattcacaagcatattgtagagtacttcattgatttattcatgaataaattgaaaat |
12243801 |
T |
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