View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17927_high_19 (Length: 238)
Name: NF17927_high_19
Description: NF17927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17927_high_19 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 81 - 238
Target Start/End: Complemental strand, 15277964 - 15277807
Alignment:
| Q |
81 |
ttgacataaatagggattgcaacattgataatttgggtttgccattagtaaattttaattatttgcaacatacaggcaatgatatatgtgatgacccatt |
180 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15277964 |
ttgacataaataggggttgcagcattgataatttgggcttgccattagtaaattttaattatttgcaacatacaggcaatgatatatgtgatgacccatt |
15277865 |
T |
|
| Q |
181 |
tatttttgcttctcaagccaaaaaagtattctatgtggagaataagagacaaaaggat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15277864 |
tatttttgcttctcaagccaaaaaagtattctatgtggagaataagagacaaaaggat |
15277807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 15278096 - 15278026
Alignment:
| Q |
16 |
caagaagttatgctagttcaagagacaaacaccctgaagaaggagaaataaactactatggtgcattgaca |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15278096 |
caagaagttatgctagttcaagagacaaacaccctaaagaaggagaaataaactactatggtgcattgaca |
15278026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 81 - 238
Target Start/End: Complemental strand, 18153576 - 18153419
Alignment:
| Q |
81 |
ttgacataaatagggattgcaacattgataatttgggtttgccattagtaaattttaattatttgcaacatacaggcaatgatatatgtgatgacccatt |
180 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18153576 |
ttgacataaataggggttgcagcattgataatttgggcttgccattagtaaattttaattatttgcaacatacaggcaatgatatatgtgatgacccatt |
18153477 |
T |
|
| Q |
181 |
tatttttgcttctcaagccaaaaaagtattctatgtggagaataagagacaaaaggat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18153476 |
tatttttgcttctcaagccaaaaaagtattctatgtggagaataagagacaaaaggat |
18153419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 12415566 - 12415413
Alignment:
| Q |
81 |
ttgacataaatagggattgcaacattgataatttgggtttgccattagtaaattttaattatttgcaacatacaggcaatgatatatgtgatgacccatt |
180 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12415566 |
ttgacataaataggggttgcagcattgataatttgggcttgccattagtaaattttaattatttgcaacatacaggcaatgatatatgtgatgacccatt |
12415467 |
T |
|
| Q |
181 |
tatttttgcttctcaagccaaaaaagtattctatgtggagaataagagacaaaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12415466 |
tatttttgcttctcaagccaaaaaagtattctatgtggagaataagagacaaaa |
12415413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 12415698 - 12415628
Alignment:
| Q |
16 |
caagaagttatgctagttcaagagacaaacaccctgaagaaggagaaataaactactatggtgcattgaca |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12415698 |
caagaagttatgctagttcaagagacaaacaccctaaagaaggagaaataaactactatggtgcattgaca |
12415628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 18153708 - 18153638
Alignment:
| Q |
16 |
caagaagttatgctagttcaagagacaaacaccctgaagaaggagaaataaactactatggtgcattgaca |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18153708 |
caagaagttatgctagttcaagagacaaacaccctaaagaaggagaaataaactactatggtgcattgaca |
18153638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University