View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17927_high_7 (Length: 440)
Name: NF17927_high_7
Description: NF17927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17927_high_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 34415748 - 34415409
Alignment:
| Q |
13 |
aatatgaccatccagctccgtaaccattttagtcttttgatctaaattaactactttaatagcctggacaatgtagaaagnnnnnnngattagtaactgt |
112 |
Q |
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| T |
34415748 |
aatatgaccatccagctccgtaaccattttagtcttttgatctaaattaactacttcaatagcctggacaatgtagaaagaaaaaaagattagtaactgt |
34415649 |
T |
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| Q |
113 |
aaattttaaaaccagcacatataaatcacggcagcataataatgtgtcgaaatgtcagtataaacacaaaatgaacaattacatgtaaacaaaatggaaa |
212 |
Q |
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| T |
34415648 |
aaattttaaaaccagcacagataaatcacggcagcataataatgtgccgaaatgtcagtataaacacaaaatgaacaattacatgtaaacaaaatggaaa |
34415549 |
T |
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| Q |
213 |
acactttcgacaccaagagaatgaggacaaaataaaataaaagaattggcttcctctcaaaataaattaaaatacctgacaacttgtacctaataagaca |
312 |
Q |
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| T |
34415548 |
acacattagacaccaagagaatgaggacaaaataaaacaaaagaattggcttcctctcaaaataaattaaaatacctgacaaattgtacctaataagaca |
34415449 |
T |
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| Q |
313 |
aaaggcagcaccttatcattatttcaacaggtgcttgcca |
352 |
Q |
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| T |
34415448 |
aaaggcagcaccttatcattatttcaacaggagcttgcca |
34415409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 353 - 440
Target Start/End: Original strand, 15277734 - 15277821
Alignment:
| Q |
353 |
tatctatatcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcataacgacaaaccaatccttttgtctctt |
440 |
Q |
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| T |
15277734 |
tatctatagcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcacaacgacaaaccaatccttttgtctctt |
15277821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 353 - 440
Target Start/End: Original strand, 18153346 - 18153433
Alignment:
| Q |
353 |
tatctatatcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcataacgacaaaccaatccttttgtctctt |
440 |
Q |
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| T |
18153346 |
tatctatagcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcacaacgacaaaccaatccttttgtctctt |
18153433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 353 - 440
Target Start/End: Original strand, 12415336 - 12415423
Alignment:
| Q |
353 |
tatctatatcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcataacgacaaaccaatccttttgtctctt |
440 |
Q |
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| T |
12415336 |
tatctataacattggattgaagatcacccaaatcatatacatctctaaccttagcgtgaacaaagacaaaccaatcattttgtctctt |
12415423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 155727 - 155801
Alignment:
| Q |
13 |
aatatgaccatccagctccgtaaccattttagtcttttgatctaaattaactactttaatagc-ctggacaatgtag |
88 |
Q |
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| T |
155727 |
aatatgaccatcaagctccgtaaccattt--gtcttttgatctaaattaactattttaatagcgctggacaatgtag |
155801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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