View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17927_low_11 (Length: 382)
Name: NF17927_low_11
Description: NF17927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17927_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 33897513 - 33897883
Alignment:
| Q |
1 |
gttattgaatccaaacccttgattattcttcaccaaaaccactcttttttccttcttgcaccccttttcttcacacatacctccatttttaaacactgca |
100 |
Q |
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| T |
33897513 |
gttattgaatccaaacccttgattattcttcaccaaaaccactcttttttccttcttgcaccccttttcttcacacatacctccatttttaaacactgca |
33897612 |
T |
|
| Q |
101 |
cctcccaaaaaagaccacctatccctgcatgctctcaacttgaaactacccagatgaaaagaattaaactttgggtctaaattggagaaagaaaaggtgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33897613 |
cctcccaaaaaagaccacctatccctgcatgctctcaacttgaaactacccagatgaaaagaattaaactttgggtctaaattggagaaagaaaaagtgg |
33897712 |
T |
|
| Q |
201 |
gttgtgtcttgtatatgctatcattgggtttcaagtgtgaaaatttgatggagaattgtacaagagtggacatggggaatattgaataagggtgaagtaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33897713 |
gttgtgtcttgtatatgctatcattgggtttcaagtgtgaaaatttgatggagaattgtacaagagtggacatggggaatattgaataagggtgaagtaa |
33897812 |
T |
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| Q |
301 |
aatcttagtgtacttatggagttagaaaaggtttagacatgtcgaatggaacattgcagatgatgatgatg |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33897813 |
aatcttagtgtacttatggagttagaaaaggtttagacatgtcgaatggaacattgtagatgatgatgatg |
33897883 |
T |
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