View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17927_low_12 (Length: 376)
Name: NF17927_low_12
Description: NF17927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17927_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 107 - 359
Target Start/End: Original strand, 5567224 - 5567476
Alignment:
| Q |
107 |
gcgcgcgcacgtacatgtagataaatagataactcgtcaattagaacttgagcatactcctcagggttataggtgccacttgtgttgtagagttttggtt |
206 |
Q |
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| T |
5567224 |
gcgcgcgcacgtacatgtagataaatagataactcgtcaattagaacttgagcatactcctcagggttataggtgccacttgtgttgtagagttctggtt |
5567323 |
T |
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| Q |
207 |
ggaaataatttaacgagtaatcgttggtgcctatataaacataatacaaacacttatttagatattgtgcagcttgttgaaaacctccaagctcgttagc |
306 |
Q |
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| T |
5567324 |
ggaaataatttaacgagtaattgttggtgcctatataaacataatacaaacacttatttagatattgtgcagcttgttgaaaacctccaagctcgttagc |
5567423 |
T |
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| Q |
307 |
aatttgagcaactatagttttgtgattttctatctgtaatcccaaggcgatat |
359 |
Q |
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| T |
5567424 |
aatttgagcaactatagttttgtgattttctatctgtaatcccaaggcgatat |
5567476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 5567084 - 5567157
Alignment:
| Q |
13 |
aatataatgattaatcgaaaccgtaaaacaaatagaaattaaaaacttctttttaacaagaatgatatatatat |
86 |
Q |
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| T |
5567084 |
aatataatgattgattgacaccgtaaaccaaatagaaattaaaaacttctttttaacaagaatgatatatatat |
5567157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 5576101 - 5576149
Alignment:
| Q |
303 |
tagcaatttgagcaactatagttttgtgattttctatctgtaatcccaa |
351 |
Q |
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| T |
5576101 |
tagcaattcgagaaactataactttgtgattttctaactgtaatcccaa |
5576149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 317
Target Start/End: Original strand, 7016579 - 7016671
Alignment:
| Q |
225 |
aatcgttggtgcctatataaacataatacaaacacttatttagatattgtgcagcttgttgaaaacctccaagctcgttagcaatttgagcaa |
317 |
Q |
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| T |
7016579 |
aatcgttgctgcctatattgacataatacaagcatttatttagatattgtgaagcttgtgcaacacctccaagcttgatagcaatttgggcaa |
7016671 |
T |
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