View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17927_low_2 (Length: 681)

Name: NF17927_low_2
Description: NF17927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17927_low_2
NF17927_low_2
[»] chr7 (18 HSPs)
chr7 (101-631)||(34926824-34927353)
chr7 (1-64)||(34926723-34926786)
chr7 (374-467)||(40629451-40629542)
chr7 (403-481)||(44613493-44613571)
chr7 (403-467)||(18837210-18837274)
chr7 (403-467)||(38372546-38372610)
chr7 (406-484)||(29390567-29390645)
chr7 (410-467)||(34922926-34922983)
chr7 (403-467)||(30181538-30181602)
chr7 (417-461)||(41094149-41094193)
chr7 (423-481)||(14691319-14691378)
chr7 (402-436)||(35331129-35331163)
chr7 (411-465)||(41677370-41677424)
chr7 (417-467)||(47511045-47511095)
chr7 (403-456)||(12473194-12473247)
chr7 (417-466)||(33288134-33288183)
chr7 (422-462)||(9546423-9546463)
chr7 (417-477)||(41037755-41037814)
[»] chr2 (17 HSPs)
chr2 (403-467)||(4090477-4090541)
chr2 (403-456)||(34913435-34913488)
chr2 (410-481)||(25836732-25836803)
chr2 (403-481)||(4026914-4026991)
chr2 (403-481)||(33321332-33321410)
chr2 (403-467)||(2790104-2790169)
chr2 (403-456)||(27703503-27703556)
chr2 (401-481)||(33321423-33321503)
chr2 (410-462)||(43787842-43787894)
chr2 (391-454)||(29774721-29774784)
chr2 (403-467)||(38216011-38216071)
chr2 (376-450)||(14365066-14365141)
chr2 (406-462)||(21788448-21788504)
chr2 (417-467)||(887414-887464)
chr2 (403-465)||(9140766-9140827)
chr2 (425-462)||(41554619-41554656)
chr2 (403-435)||(23956318-23956350)
[»] scaffold0157 (1 HSPs)
scaffold0157 (374-465)||(24706-24795)
[»] chr4 (23 HSPs)
chr4 (374-465)||(12495682-12495771)
chr4 (403-484)||(3564208-3564289)
chr4 (403-487)||(18424291-18424375)
chr4 (375-467)||(23297399-23297490)
chr4 (403-481)||(35124375-35124453)
chr4 (378-463)||(42611905-42611990)
chr4 (401-481)||(948058-948138)
chr4 (374-456)||(8130448-8130529)
chr4 (375-461)||(29877600-29877685)
chr4 (373-451)||(34633358-34633435)
chr4 (417-465)||(896972-897020)
chr4 (373-481)||(40699315-40699422)
chr4 (422-481)||(28074372-28074431)
chr4 (417-467)||(7148774-7148824)
chr4 (398-460)||(31736427-31736489)
chr4 (403-456)||(38345866-38345919)
chr4 (403-481)||(212968-213045)
chr4 (403-481)||(41228891-41228969)
chr4 (403-465)||(43699519-43699581)
chr4 (417-467)||(52274154-52274204)
chr4 (417-481)||(488404-488468)
chr4 (405-465)||(27368188-27368248)
chr4 (426-462)||(29615385-29615421)
[»] chr5 (34 HSPs)
chr5 (403-465)||(17128266-17128328)
chr5 (403-467)||(22201970-22202034)
chr5 (404-466)||(42852011-42852073)
chr5 (403-480)||(29922210-29922287)
chr5 (403-466)||(10537254-10537317)
chr5 (403-481)||(1473344-1473422)
chr5 (399-465)||(11706954-11707020)
chr5 (403-465)||(24030203-24030265)
chr5 (404-465)||(1576620-1576680)
chr5 (404-465)||(1608135-1608195)
chr5 (403-467)||(7364343-7364407)
chr5 (422-481)||(12467271-12467330)
chr5 (403-465)||(2878712-2878774)
chr5 (401-467)||(3520537-3520602)
chr5 (422-467)||(41534630-41534675)
chr5 (373-481)||(12987034-12987141)
chr5 (373-481)||(13060622-13060729)
chr5 (417-481)||(28625482-28625546)
chr5 (403-462)||(1372032-1372091)
chr5 (401-480)||(11163290-11163369)
chr5 (404-455)||(43010624-43010675)
chr5 (423-481)||(3977483-3977541)
chr5 (404-462)||(11991294-11991352)
chr5 (406-456)||(14243814-14243864)
chr5 (403-481)||(40415992-40416070)
chr5 (417-467)||(42706798-42706848)
chr5 (403-480)||(2670063-2670140)
chr5 (407-456)||(30852163-30852212)
chr5 (430-479)||(31637116-31637165)
chr5 (417-481)||(1868848-1868912)
chr5 (375-435)||(2577481-2577540)
chr5 (403-451)||(7565320-7565368)
chr5 (403-435)||(15413980-15414012)
chr5 (405-457)||(27981956-27982008)
[»] chr8 (16 HSPs)
chr8 (401-456)||(19327853-19327908)
chr8 (403-467)||(32131428-32131492)
chr8 (401-456)||(13131416-13131471)
chr8 (417-467)||(28879060-28879110)
chr8 (401-481)||(16972376-16972457)
chr8 (422-478)||(13265491-13265547)
chr8 (397-456)||(7638505-7638564)
chr8 (417-464)||(32213059-32213106)
chr8 (417-480)||(32975689-32975752)
chr8 (417-467)||(34286597-34286647)
chr8 (403-456)||(16706145-16706198)
chr8 (403-467)||(19925422-19925486)
chr8 (412-456)||(29243108-29243152)
chr8 (401-465)||(35285914-35285978)
chr8 (417-481)||(35453412-35453476)
chr8 (417-481)||(38895661-38895725)
[»] chr3 (19 HSPs)
chr3 (401-456)||(10272108-10272163)
chr3 (403-481)||(40581097-40581175)
chr3 (401-481)||(53218060-53218140)
chr3 (403-467)||(2086725-2086789)
chr3 (406-481)||(22809213-22809289)
chr3 (423-465)||(10521162-10521204)
chr3 (424-465)||(10667407-10667448)
chr3 (424-481)||(52421161-52421218)
chr3 (417-481)||(43079954-43080018)
chr3 (420-463)||(42956217-42956260)
chr3 (403-481)||(29270349-29270427)
chr3 (403-481)||(34707733-34707811)
chr3 (403-481)||(51409381-51409459)
chr3 (405-462)||(11528881-11528938)
chr3 (412-465)||(24842143-24842196)
chr3 (403-456)||(30499954-30500007)
chr3 (403-456)||(36266232-36266285)
chr3 (403-451)||(33946592-33946640)
chr3 (417-481)||(52021248-52021312)
[»] chr1 (19 HSPs)
chr1 (384-481)||(4068085-4068181)
chr1 (406-466)||(18327515-18327575)
chr1 (406-481)||(13038938-13039013)
chr1 (422-481)||(37329432-37329491)
chr1 (401-467)||(35590116-35590182)
chr1 (403-456)||(20169252-20169305)
chr1 (406-465)||(391159-391219)
chr1 (417-481)||(6337776-6337840)
chr1 (422-481)||(15515367-15515426)
chr1 (422-465)||(39941448-39941491)
chr1 (422-484)||(10365178-10365240)
chr1 (403-465)||(10850107-10850169)
chr1 (403-445)||(22593338-22593380)
chr1 (417-462)||(22593446-22593491)
chr1 (417-481)||(1005342-1005406)
chr1 (425-481)||(26988158-26988214)
chr1 (409-481)||(35282614-35282686)
chr1 (403-467)||(46689584-46689648)
chr1 (417-481)||(48819301-48819365)
[»] chr6 (19 HSPs)
chr6 (403-456)||(30533968-30534021)
chr6 (401-465)||(3211037-3211101)
chr6 (403-481)||(2255722-2255800)
chr6 (384-481)||(7267745-7267841)
chr6 (425-481)||(1240631-1240687)
chr6 (417-481)||(10755300-10755364)
chr6 (379-467)||(21871318-21871404)
chr6 (403-462)||(6632647-6632706)
chr6 (403-481)||(6758615-6758693)
chr6 (401-463)||(9582494-9582556)
chr6 (403-481)||(9894754-9894832)
chr6 (412-481)||(8014785-8014854)
chr6 (403-464)||(9201768-9201829)
chr6 (403-456)||(35111380-35111433)
chr6 (403-467)||(715959-716023)
chr6 (417-481)||(2034249-2034313)
chr6 (417-481)||(21025247-21025311)
chr6 (403-451)||(29623527-29623575)
chr6 (377-445)||(35071334-35071401)
[»] scaffold0057 (2 HSPs)
scaffold0057 (411-467)||(24423-24478)
scaffold0057 (403-463)||(43854-43914)
[»] scaffold0041 (1 HSPs)
scaffold0041 (417-461)||(109103-109147)
[»] scaffold0024 (1 HSPs)
scaffold0024 (401-481)||(97226-97306)


Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 101 - 631
Target Start/End: Original strand, 34926824 - 34927353
Alignment:
Q  101 ttcaaacttctattttagaaatcctagaagcaaaagctcaagaaaaggtttactaagaagtaagaactaggttagaatagataatcaaaattctactagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34926824 ttcaaacttctattttagaaatcctagaagcaaaagctcaagaaaaggtttactaagaagtaagaactaggttagaatagataatcaaaattctactagg 34926923  T
Q  201 aaaatttactaaatcagtccacccttaatttgttctaccttgcagtgtaaaattcaattgcaaactcgcacaacacatgtgtgcagctactgaaaataca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34926924 aaaatttactaaatcagtccacccttaatttgttctaccttgcggtgtaaaattcaattgcaaactcgcacaacacatgtgtgcagctactgaaaataca 34927023  T
Q  301 caataacaattactctataagaaccggaatataaacaacatcaaaaaacaaacatttgtttggtttggtaacaagggcctgtctggattggtctttttta 400  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34927024 caataactattactctataagaaccggaatataaacaacatcaaaaaacaaacatttgtttggtttggtaacaagggcctgtctggattggtctttttta 34927123  T
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaacaatttgaaaagtgtgata 500  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  34927124 ttagcttatgcaaaacagctgatgcaaataaataaacttatctgtattattcataaacttgtcaaggcaattcatgaaaaacaacttgaaaaatgtgata 34927223  T
Q  501 agaacataactatcaactatttttcatattcaatgaaatgaagaaaagatgcaatttttgagatgaaaaacgaagacccagaaggtggaaatgaaatggg 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34927224 agaacataactatcaactatttttcatattcaatgaaatgaagaaaagatgcaa-ttttgagatgaaaaacgaagacccagaaggtggaaatgaaatggg 34927322  T
Q  601 tatgaatggattaagaggagaatgaaaaaac 631  Q
    |||||||||||||||||||||||||||||||    
T  34927323 tatgaatggattaagaggagaatgaaaaaac 34927353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34926723 - 34926786
Alignment:
Q  1 cataaaatcgaaaaataccctgaatcaagaacattcaattaaaatcttaaatattttggagctt 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  34926723 cataaaatcgaaaaataccctgaatcaagaacattcaattaaaatctaaaatattttggggctt 34926786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 374 - 467
Target Start/End: Complemental strand, 40629542 - 40629451
Alignment:
Q  374 agggcctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    ||||||||| |||||||| ||| ||| | |||||||||||||||||| || ||||||||||||||| |||||||||||||||| ||||||||||    
T  40629542 agggcctgtttggattgg-cttatttttgagcttatgcaaaacagcttatccaaataaataaactt-tatgtattattcataagcttgtcaagg 40629451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 481
Target Start/End: Complemental strand, 44613571 - 44613493
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||||||||||||| |||||||||||||| ||| ||| |||||||||||| ||||| |||| | || ||||||||    
T  44613571 agcttatgcaaaacagcttatgcaaataaataagcttttatttattattcataagcttgttaaggtagtttatgaaaaa 44613493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 403 - 467
Target Start/End: Original strand, 18837210 - 18837274
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||||||||||  |||||||||||||| ||||| |||||||||||||| ||||| ||||    
T  18837210 agcttatgcaaaacagcatatgcaaataaataagcttatgtgtattattcataagcttgtaaagg 18837274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 403 - 467
Target Start/End: Original strand, 38372546 - 38372610
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||||||||||| |||||||||||||| ||  ||||||||||||||||  |||||||||    
T  38372546 agcttatgcaaaacagcttatgcaaataaataagctcttatgtattattcataagtttgtcaagg 38372610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 484
Target Start/End: Complemental strand, 29390645 - 29390567
Alignment:
Q  406 ttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaacaa 484  Q
    ||||| |||||| || |||||||||||||| |||  ||||||||||||||| ||||| |||| | || |||||||||||    
T  29390645 ttatggaaaacaacttatgcaaataaataatctttgatgtattattcataagcttgtaaaggtagtttatgaaaaacaa 29390567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 34922926 - 34922983
Alignment:
Q  410 gcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||| || |||||||||||||| ||| ||||||||||||||||  |||||||||    
T  34922926 gcaaaacaacttatgcaaataaataagcttttatgtattattcataagtttgtcaagg 34922983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 467
Target Start/End: Original strand, 30181538 - 30181602
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    ||||||||||| ||| || | ||||||||| || ||| |||||||||||||||| ||||||||||    
T  30181538 agcttatgcaatacaacttaggcaaataaagaagcttttatgtattattcataagcttgtcaagg 30181602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 41094149 - 41094193
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttg 461  Q
    |||| |||||||||||||||||| |||||||||||||||| ||||    
T  41094149 agcttatgcaaataaataaacttctatgtattattcataagcttg 41094193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 481
Target Start/End: Complemental strand, 14691378 - 14691319
Alignment:
Q  423 tgcaaataaataaa-cttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||||||||| ||| |||||||||||||||| |||||||| | |||| ||||||||    
T  14691378 tgcaaataaataaagcttttatgtattattcataagcttgtcaatgtaatttatgaaaaa 14691319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 402 - 436
Target Start/End: Original strand, 35331129 - 35331163
Alignment:
Q  402 tagcttatgcaaaacagctgatgcaaataaataaa 436  Q
    ||||||||||||||||||| |||||||||||||||    
T  35331129 tagcttatgcaaaacagcttatgcaaataaataaa 35331163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 465
Target Start/End: Original strand, 41677370 - 41677424
Alignment:
Q  411 caaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    ||||||| || ||||||||||||||| || ||||||||||||||||  |||||||    
T  41677370 caaaacaacttatgcaaataaataaatttttatgtattattcataagtttgtcaa 41677424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 467
Target Start/End: Original strand, 47511045 - 47511095
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||| |||||||||||||| ||| |||||||||||||||| ||||| ||||    
T  47511045 agcttatgcaaataaataagcttttatgtattattcataagcttgttaagg 47511095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 12473194 - 12473247
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    ||||||||||||||| || ||||||| ||||||  || ||||||||||||||||    
T  12473194 agcttatgcaaaacaacttatgcaaacaaataagtttttatgtattattcataa 12473247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 466
Target Start/End: Complemental strand, 33288183 - 33288134
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaag 466  Q
    |||| |||||||||||||| ||| |||||||||||||| | |||||||||    
T  33288183 agcttatgcaaataaataagcttttatgtattattcattagcttgtcaag 33288134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 9546463 - 9546423
Alignment:
Q  422 atgcaaataaataaacttatatgtattattcataaacttgt 462  Q
    ||||||||||||||| || ||||||||||||||||| ||||    
T  9546463 atgcaaataaataaagttttatgtattattcataaatttgt 9546423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 477
Target Start/End: Original strand, 41037755 - 41037814
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatga 477  Q
    |||| |||||||||||||| ||| ||||||||||||| || |||||||||| |||| ||||    
T  41037755 agcttatgcaaataaataagcttttatgtattattca-aagcttgtcaaggtaatttatga 41037814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 403 - 467
Target Start/End: Original strand, 4090477 - 4090541
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||||||||||| ||||||||||    
T  4090477 agcttatgcaaaacagcttatgcaaataaataaactttgatgtattattcataatcttgtcaagg 4090541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 34913488 - 34913435
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  34913488 agcttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataa 34913435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 410 - 481
Target Start/End: Complemental strand, 25836803 - 25836732
Alignment:
Q  410 gcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||| |||||||||||||  ||| |||||||||||||||| |||||||||| | || ||||||||    
T  25836803 gcaaaacagcttatgcaaataaatatgcttttatgtattattcataagcttgtcaaggtagtttatgaaaaa 25836732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 4026914 - 4026991
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||||||||| ||| |||||||||||||| ||| ||||||||| |||||| |||||||||| | || ||||||||    
T  4026914 agcttatgcaaaactgcttatgcaaataaataagcttttatgtatta-tcataagcttgtcaaggtagtttatgaaaaa 4026991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 403 - 481
Target Start/End: Complemental strand, 33321410 - 33321332
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||| ||  ||||||||||||| ||| ||||| |||||||||| |||||||||| | || ||||||||    
T  33321410 agcttatgcaaaacaacttgtgcaaataaataagcttttatgtcttattcataagcttgtcaaggtagtttatgaaaaa 33321332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 2790169 - 2790104
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaa-cttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||||||||||| ||||||||||||||| ||| |||| |||||| |||| ||||||||||    
T  2790169 agcttatgcaaaacagcttatgcaaataaataaagcttttatgcattattgataagcttgtcaagg 2790104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 27703556 - 27703503
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    |||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||    
T  27703556 agcttatgcaaaacagcttatgcaaataaataagcttttatatattattcataa 27703503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 481
Target Start/End: Complemental strand, 33321503 - 33321423
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||||| || |||||||||| |||  || ||||||||| |||||| |||||||||| | || ||||||||    
T  33321503 ttagcttatgcaaaacaacttatgcaaataattaagtttttatgtattactcataagcttgtcaaggtagtttatgaaaaa 33321423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 43787894 - 43787842
Alignment:
Q  410 gcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgt 462  Q
    ||||||||| | || ||||||||||||||| ||||||||||||||||||||||    
T  43787894 gcaaaacagtttatacaaataaataaacttttatgtattattcataaacttgt 43787842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 391 - 454
Target Start/End: Original strand, 29774721 - 29774784
Alignment:
Q  391 gtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcat 454  Q
    ||||| ||| |||||||||||| |||| || |||||||||||||||||| |||| |||||||||    
T  29774721 gtcttattttttagcttatgcataacaacttatgcaaataaataaacttttatgcattattcat 29774784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 403 - 467
Target Start/End: Original strand, 38216011 - 38216071
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||||||||||| ||||||||||||||     |||||||||||||||| ||||||||||    
T  38216011 agcttatgcaaaacagcttatgcaaataaataa----ttatgtattattcataagcttgtcaagg 38216071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 450
Target Start/End: Original strand, 14365066 - 14365141
Alignment:
Q  376 ggcctgtctggattgg-tcttttttattagcttatgcaaaacagctgatgcaaataaataaa-cttatatgtattat 450  Q
    ||||||| |||||||| || ||||| ||||||| |||||||||| | ||||||||||||||| ||||||||||||||    
T  14365066 ggcctgtttggattggctcattttt-ttagcttgtgcaaaacagtttatgcaaataaataaagcttatatgtattat 14365141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 462
Target Start/End: Original strand, 21788448 - 21788504
Alignment:
Q  406 ttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgt 462  Q
    |||||||||||| || |||||||||||||| ||| ||| |||||||||||| |||||    
T  21788448 ttatgcaaaacatcttatgcaaataaataagcttttatttattattcataagcttgt 21788504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 467
Target Start/End: Original strand, 887414 - 887464
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||| |||||||||||||| ||| | |||||||||||||| ||||||||||    
T  887414 agcttatgcaaataaataagcttttttgtattattcataagcttgtcaagg 887464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 465
Target Start/End: Complemental strand, 9140827 - 9140766
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    ||||||| ||||||| |  |||||||||||||| ||| ||||||||| |||||||||||||||    
T  9140827 agcttatacaaaacatcgtatgcaaataaataaccttttatgtatta-tcataaacttgtcaa 9140766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 41554656 - 41554619
Alignment:
Q  425 caaataaataaacttatatgtattattcataaacttgt 462  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  41554656 caaataaataaacttttatgtattattcataaatttgt 41554619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 23956350 - 23956318
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataa 435  Q
    |||||||||||||||||| ||||||||||||||    
T  23956350 agcttatgcaaaacagcttatgcaaataaataa 23956318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 374 - 465
Target Start/End: Original strand, 24706 - 24795
Alignment:
Q  374 agggcctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    ||||||||| ||||||||| | |||||| |||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||    
T  24706 agggcctgtttggattggt-tattttat-agcttaagcaaaacagcttatgcaaataaataagcttttatgtattattcataagcttgtcaa 24795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 374 - 465
Target Start/End: Complemental strand, 12495771 - 12495682
Alignment:
Q  374 agggcctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    ||||||||| ||||||||| | |||||| |||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||    
T  12495771 agggcctgtttggattggt-tattttat-agcttaagcaaaacagcttatgcaaataaataagcttttatgtattattcataagcttgtcaa 12495682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 403 - 484
Target Start/End: Original strand, 3564208 - 3564289
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaacaa 484  Q
    |||||||||||||||||| ||| |||||||||||||| ||| ||||||||||||  ||||||||| | || |||||||||||    
T  3564208 agcttatgcaaaacagcttatgaaaataaataaacttttatatattattcataagtttgtcaaggtagtttatgaaaaacaa 3564289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 403 - 487
Target Start/End: Complemental strand, 18424375 - 18424291
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaacaattt 487  Q
    |||||||||||||||  | || ||||||||||| ||| |||||||||||||||||||||| |||| | || ||||||||||||||    
T  18424375 agcttatgcaaaacaatttatacaaataaataagcttttatgtattattcataaacttgtgaaggtagtttatgaaaaacaattt 18424291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 375 - 467
Target Start/End: Original strand, 23297399 - 23297490
Alignment:
Q  375 gggcctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||| |||||||| ||| ||| | ||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||  |||||||||    
T  23297399 gggcctgtttggattgg-cttatttttgagcttatgcaaaatagcttatgcaaataaataagcttttatgtattattcataagtttgtcaagg 23297490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 35124375 - 35124453
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||||||||||||| ||||||||| |||| ||| |||||| ||||||||| |||||||||| | || ||||||||    
T  35124375 agcttatgcaaaacagcttatgcaaatatataaccttttatgtactattcataagcttgtcaaggtagtttatgaaaaa 35124453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 463
Target Start/End: Complemental strand, 42611990 - 42611905
Alignment:
Q  378 cctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaac-ttatatgtattattcataaacttgtc 463  Q
    ||||| |||||||| ||| ||| ||||||||||||||||| || |||||||||||||| | ||||||||||||||||||| ||||||    
T  42611990 cctgtttggattgg-cttattttttagcttatgcaaaacaacttatgcaaataaataagctttatatgtattattcataagcttgtc 42611905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 401 - 481
Target Start/End: Original strand, 948058 - 948138
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||| |||| ||| |||||||||| ||| ||||||||||||||||  ||||||||| | || ||||||||    
T  948058 ttagcttatgcaaaatagcttatgaaaataaataagcttttatgtattattcataactttgtcaaggtagtttatgaaaaa 948138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 374 - 456
Target Start/End: Original strand, 8130448 - 8130529
Alignment:
Q  374 agggcctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    ||||||||  |||||||| ||| ||| ||||| |||||||||||||| |||||||||||||| ||| |||| |||||||||||    
T  8130448 agggcctggttggattgg-cttattttttagcatatgcaaaacagcttatgcaaataaataagcttttatgcattattcataa 8130529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 461
Target Start/End: Original strand, 29877600 - 29877685
Alignment:
Q  375 gggcctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttg 461  Q
    |||||||| |||||||| ||| ||| | |||||||||||||||  | |||||||||||||| ||| |||||||||||||||| ||||    
T  29877600 gggcctgtttggattgg-cttatttttgagcttatgcaaaacaatttatgcaaataaataagcttttatgtattattcataagcttg 29877685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 373 - 451
Target Start/End: Original strand, 34633358 - 34633435
Alignment:
Q  373 aagggcctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattatt 451  Q
    ||||||| || |||||||| ||| ||| ||||||||||||||||| || |||||||||||||||||| ||||| |||||    
T  34633358 aagggcccgtttggattgg-cttattttttagcttatgcaaaacaacttatgcaaataaataaacttttatgttttatt 34633435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 465
Target Start/End: Original strand, 896972 - 897020
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    |||| |||||||||||||||||| |||||||||||||||| ||||||||    
T  896972 agcttatgcaaataaataaacttttatgtattattcataagcttgtcaa 897020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 481
Target Start/End: Original strand, 40699315 - 40699422
Alignment:
Q  373 aagggcctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaatt 472  Q
    ||||||| ||||||||||| ||| ||  | |||||||||||||||||| ||||||||||||||| || |||||| |   ||||| |||||||||| | ||    
T  40699315 aagggcccgtctggattgg-cttattattgagcttatgcaaaacagcttatgcaaataaataaatttttatgtagtgcgcataagcttgtcaaggtagtt 40699413  T
Q  473 catgaaaaa 481  Q
     ||||||||    
T  40699414 tatgaaaaa 40699422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 481
Target Start/End: Original strand, 28074372 - 28074431
Alignment:
Q  422 atgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||||||||| ||| |||||||||||||||| |||||||||| | || ||||||||    
T  28074372 atgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaa 28074431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 467
Target Start/End: Original strand, 7148774 - 7148824
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||| |||||||||||||| ||| |||||||||||||||| ||||||||||    
T  7148774 agcttatgcaaataaataagcttttatgtattattcataagcttgtcaagg 7148824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 398 - 460
Target Start/End: Complemental strand, 31736489 - 31736427
Alignment:
Q  398 ttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaactt 460  Q
    |||| ||||||||||||||| || ||| ||||||||||| || |||||| |||||||||||||    
T  31736489 ttatgagcttatgcaaaacaacttatgtaaataaataaaattttatgtactattcataaactt 31736427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 38345919 - 38345866
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    |||||||||||||||||| || ||||||||||| ||| |||||| |||||||||    
T  38345919 agcttatgcaaaacagcttatccaaataaataagcttttatgtagtattcataa 38345866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 481
Target Start/End: Complemental strand, 213045 - 212968
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||| || |||||||||||| || || ||| |||||||||||| ||||| |||| | || ||||||||    
T  213045 agcttatgcaaaacaacttatgcaaataaat-aagttttatttattattcataagcttgttaaggtagtttatgaaaaa 212968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 41228891 - 41228969
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||||||||||||| |||||  ||||||  ||| ||| |||||||||||| ||||| |||| | || ||||||||    
T  41228891 agcttatgcaaaacagcttatgcaggtaaataggcttttatttattattcataagcttgttaaggtagtttatgaaaaa 41228969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 465
Target Start/End: Complemental strand, 43699581 - 43699519
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    |||||||| |||||| || || ||||||||||| ||| ||||| |||||||||| ||||||||    
T  43699581 agcttatgaaaaacaacttatacaaataaataagcttttatgtcttattcataagcttgtcaa 43699519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 52274204 - 52274154
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||| |||||||||||||||||| ||||||||||| |||| ||| ||||||    
T  52274204 agcttatgcaaataaataaacttttatgtattattgataagcttatcaagg 52274154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 481
Target Start/End: Complemental strand, 488468 - 488404
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| |||||||||| ||| ||| ||||||||||| |||| |||||||||| | || ||||||||    
T  488468 agcttatgcaaataagtaagcttttatgtattattaataagcttgtcaaggtagtttatgaaaaa 488404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 405 - 465
Target Start/End: Complemental strand, 27368248 - 27368188
Alignment:
Q  405 cttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    |||||| |||||| || |||||||||||||| ||| ||| ||||||||||||  |||||||    
T  27368248 cttatgtaaaacaacttatgcaaataaataagcttttatatattattcataagtttgtcaa 27368188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 426 - 462
Target Start/End: Original strand, 29615385 - 29615421
Alignment:
Q  426 aaataaataaacttatatgtattattcataaacttgt 462  Q
    |||||||||| |||||||||||||||||||| |||||    
T  29615385 aaataaataagcttatatgtattattcataagcttgt 29615421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 403 - 465
Target Start/End: Original strand, 17128266 - 17128328
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||    
T  17128266 agcttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataaacttatcaa 17128328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 22202034 - 22201970
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||||||||||| ||| |||||||||| ||| |||||||||||||||| ||||||||||    
T  22202034 agcttatgcaaaacagcttatgtaaataaataagcttttatgtattattcataagcttgtcaagg 22201970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 404 - 466
Target Start/End: Original strand, 42852011 - 42852073
Alignment:
Q  404 gcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaag 466  Q
    ||||||||||||||||| || ||||||||||| ||| |||||||||||||||| |||||||||    
T  42852011 gcttatgcaaaacagcttattcaaataaataagcttttatgtattattcataagcttgtcaag 42852073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 480
Target Start/End: Complemental strand, 29922287 - 29922210
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaa 480  Q
    |||||||||||||||| | ||||||||||||||  || |||||||||||||||| |||||||||| | || |||||||    
T  29922287 agcttatgcaaaacagtttatgcaaataaataagtttttatgtattattcataagcttgtcaaggtagtttatgaaaa 29922210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 403 - 466
Target Start/End: Complemental strand, 10537317 - 10537254
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaag 466  Q
    |||||||| ||||||||| |||||||||||||| ||| ||||||||||| |||| |||||||||    
T  10537317 agcttatgtaaaacagcttatgcaaataaataagcttttatgtattatttataagcttgtcaag 10537254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 1473344 - 1473422
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||| || |||| || |||||||||||||| ||| |||||||||||||||| |||||||||  |||| ||||||||    
T  1473344 agcttatacagaacaacttatgcaaataaataagcttttatgtattattcataagcttgtcaagttaatttatgaaaaa 1473422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 465
Target Start/End: Complemental strand, 11707020 - 11706954
Alignment:
Q  399 tattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    |||| ||||||||||||||||  |||||||||||||| ||| ||||||| |||| ||||||||||||    
T  11707020 tattggcttatgcaaaacagcctatgcaaataaataagcttttatgtatcattcctaaacttgtcaa 11706954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 403 - 465
Target Start/End: Original strand, 24030203 - 24030265
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    ||||||| |||||||||| || ||||||||||| ||| |||||||||||||||| ||||||||    
T  24030203 agcttatacaaaacagcttatccaaataaataagcttttatgtattattcataagcttgtcaa 24030265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 465
Target Start/End: Original strand, 1576620 - 1576680
Alignment:
Q  404 gcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    ||||||||||||||||| | |||||||||||||||| |||||||| ||||||| ||||||||    
T  1576620 gcttatgcaaaacagcttaagcaaataaataaacttttatgtatt-ttcataagcttgtcaa 1576680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 465
Target Start/End: Complemental strand, 1608195 - 1608135
Alignment:
Q  404 gcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    ||||||||||||||||| | |||||||||||||||| |||||||| ||||||| ||||||||    
T  1608195 gcttatgcaaaacagcttaagcaaataaataaacttttatgtatt-ttcataagcttgtcaa 1608135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 7364407 - 7364343
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||| ||||||||||||||||| |||||| ||| ||| |||||||||||| ||||| ||||    
T  7364407 agcttatgtaaaacagctgatgcaaaaaaataagcttctatttattattcataagcttgttaagg 7364343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 481
Target Start/End: Original strand, 12467271 - 12467330
Alignment:
Q  422 atgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||||||||| ||| |||||||||||||||| |||||||||| | || ||||||||    
T  12467271 atgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaa 12467330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 465
Target Start/End: Complemental strand, 2878774 - 2878712
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    ||||||||| |||||||| |||||||||||||| ||| ||| ||||||||||||  |||||||    
T  2878774 agcttatgctaaacagcttatgcaaataaataagcttttatctattattcataagtttgtcaa 2878712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 401 - 467
Target Start/End: Complemental strand, 3520602 - 3520537
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||||||||||| | ||| |||||||||| ||| || ||||||||||||| ||||||||||    
T  3520602 ttagcttatgcaaaacagtttatgtaaataaataacctttta-gtattattcataagcttgtcaagg 3520537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 41534630 - 41534675
Alignment:
Q  422 atgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||||    
T  41534630 atgcaaataaataagcttttatgtattattcataagcttgtcaagg 41534675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 481
Target Start/End: Complemental strand, 12987141 - 12987034
Alignment:
Q  373 aagggcctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaatt 472  Q
    |||||||||| |||||||| ||| ||| | |  ||||| |||| | || |||||||||||||| ||| |||||||| ||||||| |||||||||| | ||    
T  12987141 aagggcctgtttggattgg-cttatttctgatattatgtaaaagaacttatgcaaataaataagcttttatgtattgttcataagcttgtcaaggtagtt 12987043  T
Q  473 catgaaaaa 481  Q
     ||||||||    
T  12987042 tatgaaaaa 12987034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 481
Target Start/End: Complemental strand, 13060729 - 13060622
Alignment:
Q  373 aagggcctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaatt 472  Q
    |||||||||| |||||||| ||| ||| | |  ||||| |||| | || |||||||||||||| ||| |||||||| ||||||| |||||||||| | ||    
T  13060729 aagggcctgtttggattgg-cttatttctgatattatgtaaaagaacttatgcaaataaataagcttttatgtattgttcataagcttgtcaaggtagtt 13060631  T
Q  473 catgaaaaa 481  Q
     ||||||||    
T  13060630 tatgaaaaa 13060622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 481
Target Start/End: Original strand, 28625482 - 28625546
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| |||||||||||||| ||| || ||||||||||||| |||||||||| | || ||||||||    
T  28625482 agcttatgcaaataaataagcttttaagtattattcataagcttgtcaaggtagtttatgaaaaa 28625546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 1372091 - 1372032
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgt 462  Q
    |||||||||||||||| | ||| ||||||||| |||| ||||||||||| |||| |||||    
T  1372091 agcttatgcaaaacagtttatgtaaataaatacacttttatgtattatttataagcttgt 1372032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 480
Target Start/End: Complemental strand, 11163369 - 11163290
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaa 480  Q
    |||||||||||||||||||| ||| |||| |||||  || ||||||| |||||||| |||||| ||| | || |||||||    
T  11163369 ttagcttatgcaaaacagcttatgtaaatcaataagtttttatgtatgattcataagcttgtcgaggtagtttatgaaaa 11163290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 43010624 - 43010675
Alignment:
Q  404 gcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcata 455  Q
    ||||||| |||||| || ||| |||||||||||||| |||||||||||||||    
T  43010624 gcttatgtaaaacaacttatgtaaataaataaacttttatgtattattcata 43010675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 3977483 - 3977541
Alignment:
Q  423 tgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||||| | || ||||||||||| |||||||||| | || ||||||||    
T  3977483 tgcaaataaataaacttttgtgcattattcataagcttgtcaaggtagtttatgaaaaa 3977541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 11991294 - 11991352
Alignment:
Q  404 gcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgt 462  Q
    |||||||||||||| || ||| |||||||||| ||| ||||||||||| |||| |||||    
T  11991294 gcttatgcaaaacaacttatgtaaataaataagcttttatgtattatttataagcttgt 11991352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 456
Target Start/End: Original strand, 14243814 - 14243864
Alignment:
Q  406 ttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    ||||||||||||||| ||| |||||||||| ||| |||||| |||||||||    
T  14243814 ttatgcaaaacagcttatgtaaataaataagcttctatgtaatattcataa 14243864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 481
Target Start/End: Complemental strand, 40416070 - 40415992
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||| || |||||||||| ||||| |  |||||||||| ||||  |||| |||| | |||||||||||    
T  40416070 agcttatgcaaaacaacttatgcaaataactaaacattaatgtattatttataagtttgttaaggtagttcatgaaaaa 40415992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 467
Target Start/End: Original strand, 42706798 - 42706848
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||| |||||||||||||| ||| || ||||||||||||| ||||||||||    
T  42706798 agcttatgcaaataaataagcttttaagtattattcataagcttgtcaagg 42706848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 480
Target Start/End: Original strand, 2670063 - 2670140
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaa 480  Q
    |||||||| ||||||| | ||||||||||| || ||| |||||| |||||||||  ||||||||| | || |||||||    
T  2670063 agcttatgtaaaacagtttatgcaaataaacaatcttttatgtactattcataagtttgtcaaggtagtttatgaaaa 2670140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 456
Target Start/End: Original strand, 30852163 - 30852212
Alignment:
Q  407 tatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    |||| ||||||| | |||||||||||||||||| ||||||||||| ||||    
T  30852163 tatgtaaaacagattatgcaaataaataaacttttatgtattattaataa 30852212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 31637165 - 31637116
Alignment:
Q  430 aaataaacttatatgtattattcataaacttgtcaagggaattcatgaaa 479  Q
    |||||| ||| |||||||||||||||| |||||||||| |||| ||||||    
T  31637165 aaataagcttttatgtattattcataagcttgtcaaggtaatttatgaaa 31637116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 481
Target Start/End: Original strand, 1868848 - 1868912
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| |||| ||||||||| ||| ||||||||||||| || |||||||||| | || ||||||||    
T  1868848 agctcatgctaataaataagcttttatgtattattcacaagcttgtcaaggtagtttatgaaaaa 1868912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 2577540 - 2577481
Alignment:
Q  375 gggcctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataa 435  Q
    ||||| || |||||||| ||| ||| ||||||||| |||||||||| ||||||||||||||    
T  2577540 gggcccgtttggattgg-cttattttttagcttatccaaaacagcttatgcaaataaataa 2577481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 451
Target Start/End: Complemental strand, 7565368 - 7565320
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattatt 451  Q
    |||| |||||||||| ||||||||||||||||  ||| |||||||||||    
T  7565368 agctaatgcaaaacaactgatgcaaataaatatgcttttatgtattatt 7565320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 15413980 - 15414012
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataa 435  Q
    |||||||||||||||||| ||||||||||||||    
T  15413980 agcttatgcaaaacagcttatgcaaataaataa 15414012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 27982008 - 27981956
Alignment:
Q  405 cttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaa 457  Q
    ||||| ||||||| || ||| ||||||||||| || |||||||||||||||||    
T  27982008 cttatacaaaacatcttatgaaaataaataaatttttatgtattattcataaa 27981956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 401 - 456
Target Start/End: Original strand, 19327853 - 19327908
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    ||||||||||||||||| || |||||||||||||||||| ||||||||||||||||    
T  19327853 ttagcttatgcaaaacaacttatgcaaataaataaacttttatgtattattcataa 19327908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 403 - 467
Target Start/End: Original strand, 32131428 - 32131492
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||||||||||| |||||||||||||| ||| |||| ||||||| |||  |||||||||    
T  32131428 agcttatgcaaaacagcttatgcaaataaataagcttttatgcattattcctaagtttgtcaagg 32131492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 401 - 456
Target Start/End: Original strand, 13131416 - 13131471
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    |||||||||||||||||  | |||||||||||||| ||| ||||||||||||||||    
T  13131416 ttagcttatgcaaaacaaattatgcaaataaataagcttttatgtattattcataa 13131471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 467
Target Start/End: Original strand, 28879060 - 28879110
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||| |||||||||||||| ||| |||||||||||||||| ||||||||||    
T  28879060 agcttatgcaaataaataagcttttatgtattattcataagcttgtcaagg 28879110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 481
Target Start/End: Complemental strand, 16972457 - 16972376
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtc-aagggaattcatgaaaaa 481  Q
    |||||||||||||||||  |  ||||||||||||| ||| ||||||||||||||||  ||||| |||| | |||||||||||    
T  16972457 ttagcttatgcaaaacaatttttgcaaataaataagcttgtatgtattattcataagtttgtctaaggtagttcatgaaaaa 16972376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 13265491 - 13265547
Alignment:
Q  422 atgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaa 478  Q
    |||||||||||||| ||| |||||||||||||||| |||||||| | | ||||||||    
T  13265491 atgcaaataaataagcttttatgtattattcataagcttgtcaaagtagttcatgaa 13265547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 456
Target Start/End: Original strand, 7638505 - 7638564
Alignment:
Q  397 tttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    |||||||||||||||||||| | | |||||||||||| | ||| ||||||||||| ||||    
T  7638505 tttattagcttatgcaaaactgtttatgcaaataaatcagcttttatgtattattaataa 7638564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 32213106 - 32213059
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtca 464  Q
    |||| |||||||||||||| ||| |||||||||||||||| |||||||    
T  32213106 agcttatgcaaataaataagcttttatgtattattcataagcttgtca 32213059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 32975689 - 32975752
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaa 480  Q
    |||| |||||||||||||| ||| ||| |||||||||||| |||||||||| | || |||||||    
T  32975689 agcttatgcaaataaataagcttttatatattattcataagcttgtcaaggtagtttatgaaaa 32975752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 34286647 - 34286597
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||| ||| |||||||||| ||| |||||||||||||||| ||||||||||    
T  34286647 agcttatgtaaataaataagcttttatgtattattcataagcttgtcaagg 34286597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 16706198 - 16706145
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    |||||||||||||| ||| |||||||||||||   || ||||||||||||||||    
T  16706198 agcttatgcaaaacggcttatgcaaataaatatgtttttatgtattattcataa 16706145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 19925486 - 19925422
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||| ||||| | |||||||||||||| | |  |||||||||| |||||||||| ||||    
T  19925486 agcttatgcataacagtttatgcaaataaataagcattaatgtattatttataaacttgttaagg 19925422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 29243152 - 29243108
Alignment:
Q  412 aaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    ||||||||| |||||||||||||| ||| ||||||||||| ||||    
T  29243152 aaaacagcttatgcaaataaataagcttttatgtattatttataa 29243108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 401 - 465
Target Start/End: Original strand, 35285914 - 35285978
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    ||||||||  |||||||||| |||||||||||||| ||| | ||| |||||||||| || |||||    
T  35285914 ttagcttacacaaaacagcttatgcaaataaataagcttttgtgtgttattcataagctcgtcaa 35285978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 481
Target Start/End: Original strand, 35453412 - 35453476
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| |||||||||||||| ||| ||||||||||||||||  || |||||| | || ||||||||    
T  35453412 agcttatgcaaataaataagcttttatgtattattcataagtttatcaaggtagtttatgaaaaa 35453476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 481
Target Start/End: Original strand, 38895661 - 38895725
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| ||||||| |||||||||| ||| |||||||||||| ||||| |||| | || ||||||||    
T  38895661 agcttatgcaaaaaaataaacttttatttattattcataagcttgttaaggtagtttatgaaaaa 38895725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 401 - 456
Target Start/End: Original strand, 10272108 - 10272163
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    ||||||||||||||||| || |||||||||||||||||| ||||||||||||||||    
T  10272108 ttagcttatgcaaaacaactcatgcaaataaataaacttttatgtattattcataa 10272163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 481
Target Start/End: Complemental strand, 40581175 - 40581097
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||| || |||||||||||||| ||| ||||||||||| |||| |||||||||| | || ||||||||    
T  40581175 agcttatgcaaaacaacttatgcaaataaataagcttttatgtattattaataagcttgtcaaggtagtttatgaaaaa 40581097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 401 - 481
Target Start/End: Complemental strand, 53218140 - 53218060
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||||| || |||| |||||||||  || |||||||||||||||| |||||||||| | || ||||||||    
T  53218140 ttagcttatgcaaaacaacttatgcgaataaataagattttatgtattattcataagcttgtcaaggtagtttatgaaaaa 53218060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 2086789 - 2086725
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    ||||||||| |||||||| ||| |||||||||||||| ||||||||||| |||| ||||| ||||    
T  2086789 agcttatgctaaacagcttatgtaaataaataaacttttatgtattatttataatcttgtaaagg 2086725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 406 - 481
Target Start/End: Complemental strand, 22809289 - 22809213
Alignment:
Q  406 ttatgcaaaacagctgatgcaaataaataaac-ttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||| |||||||||||||| | || ||| |||||||||||| |||||||||| | || ||||||||    
T  22809289 ttatgcaaaacagcttatgcaaataaataagctttttatatattattcataagcttgtcaaggtagtttatgaaaaa 22809213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 465
Target Start/End: Original strand, 10521162 - 10521204
Alignment:
Q  423 tgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    ||||||||||||| |||||||||||||||||||| ||||||||    
T  10521162 tgcaaataaataagcttatatgtattattcataagcttgtcaa 10521204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 465
Target Start/End: Original strand, 10667407 - 10667448
Alignment:
Q  424 gcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  10667407 gcaaataaataagcttatatgtattattcataagcttgtcaa 10667448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 481
Target Start/End: Complemental strand, 52421218 - 52421161
Alignment:
Q  424 gcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||||||| ||| |||||||||||||||| |||||||||| | || ||||||||    
T  52421218 gcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaa 52421161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 481
Target Start/End: Complemental strand, 43080018 - 43079954
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| |||||||||||||| ||| ||||| |||||||||| |||||||||| | || ||||||||    
T  43080018 agcttatgcaaataaataagcttttatgtgttattcataagcttgtcaaggtagtttatgaaaaa 43079954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 463
Target Start/End: Complemental strand, 42956260 - 42956217
Alignment:
Q  420 tgatgcaaataaataaacttatatgtattattcataaacttgtc 463  Q
    ||||||||||||||||  || |||||||||||||||||||||||    
T  42956260 tgatgcaaataaataagtttttatgtattattcataaacttgtc 42956217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 29270349 - 29270427
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||| || ||   ||||||||| ||| |||||||||||||||| ||| |||||  |||| ||||||||    
T  29270349 agcttatgcaaaacaacttataggaataaataagcttttatgtattattcataagcttttcaagataatttatgaaaaa 29270427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 481
Target Start/End: Complemental strand, 34707811 - 34707733
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||| || | | ||||| |||| ||| |||||||||||||||| ||||| |||| | || ||||||||    
T  34707811 agcttatgcaaaacaacttacgtaaatatataagcttttatgtattattcataagcttgttaaggtagtttatgaaaaa 34707733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 51409381 - 51409459
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||| |||| |||| |||||||||||||| ||| ||| |||||||||| |  ||||||||| | || ||||||||    
T  51409381 agcttatggaaaatagcttatgcaaataaataatcttttatttattattcatgagtttgtcaaggtagtttatgaaaaa 51409459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 462
Target Start/End: Original strand, 11528881 - 11528938
Alignment:
Q  405 cttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgt 462  Q
    ||||||||||||| || ||| || ||||||| ||| ||||||||||||||||| ||||    
T  11528881 cttatgcaaaacaacttatgtaagtaaataagcttttatgtattattcataaatttgt 11528938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Complemental strand, 24842196 - 24842143
Alignment:
Q  412 aaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    |||||| || ||||||||||||||| || ||||||||||||||||  |||||||    
T  24842196 aaaacaacttatgcaaataaataaatttttatgtattattcataagtttgtcaa 24842143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 30499954 - 30500007
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    ||||||| |||||||| | ||||||||||||||| || ||||||||||| ||||    
T  30499954 agcttatacaaaacagtttatgcaaataaataaatttttatgtattatttataa 30500007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 36266232 - 36266285
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    |||||||  ||||||| | |||||||||||||||||| ||||||||||| ||||    
T  36266232 agcttatataaaacagtttatgcaaataaataaacttttatgtattatttataa 36266285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 451
Target Start/End: Complemental strand, 33946640 - 33946592
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattatt 451  Q
    ||||||||||||| |||| |||||||||||||| ||| ||| |||||||    
T  33946640 agcttatgcaaaatagcttatgcaaataaataagcttttatttattatt 33946592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 481
Target Start/End: Original strand, 52021248 - 52021312
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| |||||||||||||  ||| ||||||||||||||||  ||||||||| | || ||||||||    
T  52021248 agcttatgcaaataaatatgcttttatgtattattcataagattgtcaaggtagtttatgaaaaa 52021312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 4068085 - 4068181
Alignment:
Q  384 tggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||| ||| ||| ||||||| ||||||| ||||  ||||||||||||| ||| |||||||||||||||| |||||||||| | || ||||||||    
T  4068085 tggattgg-cttattttttagcttttgcaaaatagcttgtgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaa 4068181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 406 - 466
Target Start/End: Original strand, 18327515 - 18327575
Alignment:
Q  406 ttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaag 466  Q
    |||| |||||||||| |||||||||||||| ||| ||||||||| |||||| |||||||||    
T  18327515 ttattcaaaacagcttatgcaaataaataagcttttatgtattactcataagcttgtcaag 18327575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 406 - 481
Target Start/End: Original strand, 13038938 - 13039013
Alignment:
Q  406 ttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||| |||||||||||||||||| ||| ||| |||||||||| | ||||| |||| | || ||||||||    
T  13038938 ttatgcaaaacggctgatgcaaataaataagcttttatatattattcatgagcttgttaaggtagtttatgaaaaa 13039013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 37329491 - 37329432
Alignment:
Q  422 atgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||| | || ||||||||    
T  37329491 atgcaaataaatgagcttttatgtattattcataaacttgtcaaggtagtttatgaaaaa 37329432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 401 - 467
Target Start/End: Original strand, 35590116 - 35590182
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||| |||||| || |||||||||||||| ||| |||||||  ||||||| ||||||||||    
T  35590116 ttagcttatgtaaaacaacttatgcaaataaataagcttttatgtatagttcataagcttgtcaagg 35590182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 20169252 - 20169305
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    |||||||| ||||||||| |||||||||||||| ||| ||||||||||| ||||    
T  20169252 agcttatgaaaaacagcttatgcaaataaataagcttttatgtattatttataa 20169305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 465
Target Start/End: Original strand, 391159 - 391219
Alignment:
Q  406 ttatgcaaaacagctgatgcaaataaataaac-ttatatgtattattcataaacttgtcaa 465  Q
    ||||||||||||||| |||||||||||||| | || ||| |||||||||||| ||||||||    
T  391159 ttatgcaaaacagcttatgcaaataaataagctttttatatattattcataagcttgtcaa 391219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 481
Target Start/End: Complemental strand, 6337840 - 6337776
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| ||| |||||||||| ||| |||||||||||||||| |||||||||| | || ||||||||    
T  6337840 agcttatgtaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaa 6337776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 15515426 - 15515367
Alignment:
Q  422 atgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| ||||||||| ||| |||||||||||||||| |||||||||| | || ||||||||    
T  15515426 atgctaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaaaaa 15515367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 465
Target Start/End: Original strand, 39941448 - 39941491
Alignment:
Q  422 atgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||    
T  39941448 atgcaaataaatgaacttttatgtattattcataagcttgtcaa 39941491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 484
Target Start/End: Original strand, 10365178 - 10365240
Alignment:
Q  422 atgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaacaa 484  Q
    |||||||| ||||||||| ||||||||||| |||| |||||||| | | || |||||||||||    
T  10365178 atgcaaatgaataaacttttatgtattattaataagcttgtcaaagtagtttatgaaaaacaa 10365240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 465
Target Start/End: Complemental strand, 10850169 - 10850107
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    ||||||||||||| || |  ||||||||||||| ||| ||||||||||||||||  |||||||    
T  10850169 agcttatgcaaaatagtttttgcaaataaataagcttttatgtattattcataaggttgtcaa 10850107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 445
Target Start/End: Original strand, 22593338 - 22593380
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgt 445  Q
    |||||||||||||||||| |||||||||||||| ||| |||||    
T  22593338 agcttatgcaaaacagcttatgcaaataaataagcttttatgt 22593380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 462
Target Start/End: Complemental strand, 22593491 - 22593446
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgt 462  Q
    |||| ||||||||||||||| || |||||||||||||||| |||||    
T  22593491 agcttatgcaaataaataaatttttatgtattattcataagcttgt 22593446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 481
Target Start/End: Original strand, 1005342 - 1005406
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| |||||||||||||| ||| || ||||||||||||| |||||| ||| | || ||||||||    
T  1005342 agcttatgcaaataaataagcttttacgtattattcataagcttgtctaggtagttaatgaaaaa 1005406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 26988158 - 26988214
Alignment:
Q  425 caaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||| ||| ||||| |||||||||| |||||||||| | || ||||||||    
T  26988158 caaataaataagcttttatgtcttattcataagcttgtcaaggtagtttatgaaaaa 26988214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 409 - 481
Target Start/End: Complemental strand, 35282686 - 35282614
Alignment:
Q  409 tgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||||||| |||||||||||||| | | ||| ||||||| |||||| ||| |||| | || ||||||||    
T  35282686 tgcaaaacagcttatgcaaataaataagcgtttatttattatttataaacatgttaaggtagtttatgaaaaa 35282614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 46689648 - 46689584
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||||||||| | ||||||||||| || ||| ||| |||||||||| | ||||| ||||    
T  46689648 agcttatgcaaaacagtttatgcaaataaaaaagcttttatttattattcatgagcttgttaagg 46689584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 481
Target Start/End: Original strand, 48819301 - 48819365
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| |||||||||||| | |||  ||||||||||||||| |||||||||| | || ||||||||    
T  48819301 agcttatgcaaataaatgagctttaatgtattattcataagcttgtcaaggtagtttatgaaaaa 48819365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 30533968 - 30534021
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    ||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  30533968 agcttgtgcaaaacagcttatgcaaataaataagcttttatgtattattcataa 30534021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 465
Target Start/End: Complemental strand, 3211101 - 3211037
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaa 465  Q
    ||||||| |||||||||||| |||||||||||||| ||| ||||||||| | |||| ||||||||    
T  3211101 ttagcttgtgcaaaacagcttatgcaaataaataagcttttatgtattactgataagcttgtcaa 3211037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 2255722 - 2255800
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||  || |||||||||||| | ||| ||||||| |||||||| ||||| |||| |||| ||||||||    
T  2255722 agcttatgcaaaacgacttatgcaaataaatgagcttttatgtatgattcataagcttgttaaggtaatttatgaaaaa 2255800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 7267745 - 7267841
Alignment:
Q  384 tggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||||||| ||| ||| |||||||| | ||||| ||| ||||||| |||||| ||| |||||||||||||||| |||| ||||| | || ||||||||    
T  7267745 tggattgg-cttgttttttagcttaagtaaaacggcttatgcaaacaaataagcttttatgtattattcataagcttgccaaggtagtttatgaaaaa 7267841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 481
Target Start/End: Complemental strand, 1240687 - 1240631
Alignment:
Q  425 caaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||| ||| |||||||||||||||| |||||||||| |||| | ||||||    
T  1240687 caaataaataagcttttatgtattattcataagcttgtcaaggtaatttacgaaaaa 1240631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 481
Target Start/End: Complemental strand, 10755364 - 10755300
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| |||||||||||||| ||| || ||||||||||||| |||||||||| || | ||||||||    
T  10755364 agcttatgcaaataaataagcttttacgtattattcataagcttgtcaaggtaacttatgaaaaa 10755300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 467
Target Start/End: Complemental strand, 21871404 - 21871318
Alignment:
Q  379 ctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||| ||||||||| | |||| |||| ||||| |||||| || |||||||||| ||||||| ||||||||||| || ||||||||||||    
T  21871404 ctgtttggattggtttatttt-ttagtttatgtaaaacaacttatgcaaataagtaaacttttatgtattattgat-aacttgtcaagg 21871318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 462
Target Start/End: Original strand, 6632647 - 6632706
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgt 462  Q
    ||||||| ||||||| || |||||||||||||  ||| ||||||||||| ||||||||||    
T  6632647 agcttattcaaaacaacttatgcaaataaatatgcttttatgtattatttataaacttgt 6632706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 6758615 - 6758693
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||||||||| || |||||||||||||| ||| | | |||||| ||||| ||||| |||| | || ||||||||    
T  6758615 agcttatgcaaaacaacttatgcaaataaataagcttttgtttattatccataagcttgttaaggtagtttatgaaaaa 6758693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 463
Target Start/End: Complemental strand, 9582556 - 9582494
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtc 463  Q
    |||||||||||| || | || ||||||||||||||| || ||||||||||| |||| ||||||    
T  9582556 ttagcttatgcagaataacttatgcaaataaataaatttttatgtattatttataaccttgtc 9582494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 9894754 - 9894832
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||| |||||||||| | |||||||||||| ||| ||||||||||| ||||  |||| |||| | || ||||||||    
T  9894754 agcttatacaaaacagcttacgcaaataaataatcttttatgtattatttataagtttgttaaggtattttatgaaaaa 9894832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 481
Target Start/End: Original strand, 8014785 - 8014854
Alignment:
Q  412 aaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||||| |||||||||| ||| ||| |||  ||||||||||| |||||||||| | || ||||||||    
T  8014785 aaaacagcttatgcaaataagtaagcttttattcattattcataagcttgtcaaggtagtttatgaaaaa 8014854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 9201829 - 9201768
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtca 464  Q
    |||||| ||||||||||| |||||||| ||||| |||   |||||||||||||| |||||||    
T  9201829 agcttacgcaaaacagcttatgcaaatgaataagctttgctgtattattcataagcttgtca 9201768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 35111433 - 35111380
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataa 456  Q
    |||||||||||||||||| ||||||||||| || ||| || ||| |||||||||    
T  35111433 agcttatgcaaaacagcttatgcaaataaacaagcttttaagtaatattcataa 35111380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 716023 - 715959
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||||| || || ||| ||||||||||  || ||||||||||| |||||||||| ||||    
T  716023 agcttatgcaaatcaacttatgtaaataaataagtttctatgtattatttataaacttgtaaagg 715959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 481
Target Start/End: Complemental strand, 2034313 - 2034249
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| |||||||||||||| ||| ||||||||||| ||||  ||||||||| | || ||||||||    
T  2034313 agcttatgcaaataaataagcttttatgtattatttataagtttgtcaaggtagtttatgaaaaa 2034249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 481
Target Start/End: Complemental strand, 21025311 - 21025247
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    |||| |||||||||||||| ||| |||||||||| ||||| ||||| |||| | || ||||||||    
T  21025311 agcttatgcaaataaataagcttttatgtattatgcataagcttgttaaggtagtttatgaaaaa 21025247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 451
Target Start/End: Complemental strand, 29623575 - 29623527
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattatt 451  Q
    ||||||||||||||| || |||||||||||||| ||| ||| |||||||    
T  29623575 agcttatgcaaaacaacttatgcaaataaataaccttttatttattatt 29623527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 377 - 445
Target Start/End: Original strand, 35071334 - 35071401
Alignment:
Q  377 gcctgtctggattggtcttttttattagcttatgcaaaacagctgatgcaaataaataaacttatatgt 445  Q
    |||||| |||||||| ||| ||| |||||||||| |||| |||| |||||||||||||| ||| |||||    
T  35071334 gcctgtttggattgg-cttattttttagcttatgaaaaatagcttatgcaaataaataagcttttatgt 35071401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 467
Target Start/End: Complemental strand, 24478 - 24423
Alignment:
Q  411 caaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagg 467  Q
    |||||||||| |||||||||||||  ||| |||||||||||||||| ||||||||||    
T  24478 caaaacagcttatgcaaataaatag-cttgtatgtattattcataagcttgtcaagg 24423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 463
Target Start/End: Complemental strand, 43914 - 43854
Alignment:
Q  403 agcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtc 463  Q
    ||||||| |||||||||  ||||||||||||||  || ||||||||||||| || ||||||    
T  43914 agcttatacaaaacagcatatgcaaataaataagtttttatgtattattcaaaagcttgtc 43854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 109147 - 109103
Alignment:
Q  417 agctgatgcaaataaataaacttatatgtattattcataaacttg 461  Q
    |||| |||||||||||||||||| |||||||||||||||| ||||    
T  109147 agcttatgcaaataaataaacttctatgtattattcataagcttg 109103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 401 - 481
Target Start/End: Complemental strand, 97306 - 97226
Alignment:
Q  401 ttagcttatgcaaaacagctgatgcaaataaataaacttatatgtattattcataaacttgtcaagggaattcatgaaaaa 481  Q
    ||||||| || |||| |||| |||||||||||||| ||  |||||| ||||||||| || ||||||| | || ||||||||    
T  97306 ttagcttgtgtaaaatagcttatgcaaataaataagctattatgtagtattcataagctagtcaaggtagtttatgaaaaa 97226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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