View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17927_low_21 (Length: 237)
Name: NF17927_low_21
Description: NF17927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17927_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 14789161 - 14789369
Alignment:
| Q |
20 |
ctgattgatcccagcacgtataagttcaacttgtgacctactccaatacttaattcattcatcaactcactcatgctatcacattttattttggttaaaa |
119 |
Q |
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| T |
14789161 |
ctgattgatcccagcacgtataagttcaacttgtgacctactccaatacttaattcattcatcaactcactcatgctctcacattttattttggttaaaa |
14789260 |
T |
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| Q |
120 |
tatgtttagaataaagggggatgaac-aaaaatcatgagtgtaaaccaattttacacatgctttcagtatggtggtgttcgtagttcgaacttcagacct |
218 |
Q |
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| T |
14789261 |
tatgtttagaataaa-ggggatgaacaaaaaatcatgagtgtaaaccaattttacacatgcttttggtatggtggtgttcgtagttcgaaattcaaacct |
14789359 |
T |
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| Q |
219 |
tgcatatatt |
228 |
Q |
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| T |
14789360 |
tacatatatt |
14789369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 21936021 - 21936061
Alignment:
| Q |
188 |
tggtggtgttcgtagttcgaacttcagaccttgcatatatt |
228 |
Q |
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| T |
21936021 |
tggtggtgtccgtagttcgaactccggaccttgcatatatt |
21936061 |
T |
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