View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17927_low_24 (Length: 227)
Name: NF17927_low_24
Description: NF17927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17927_low_24 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 15214435 - 15214209
Alignment:
| Q |
1 |
cccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15214435 |
cccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttat |
15214336 |
T |
|
| Q |
101 |
ccattgattctattatgtccttcatttctttcctattatgttcccaacaaaaatttgttcttcaatttttgttttcattattgtaggggaggcgtggcct |
200 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
15214335 |
ccattgtttctattatatccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggagtggcct |
15214236 |
T |
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| Q |
201 |
agatagtgagatagggaaccaaggaca |
227 |
Q |
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|||||||||||||||||||| ||||| |
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| T |
15214235 |
ggatagtgagatagggaaccagggaca |
15214209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 15253654 - 15253428
Alignment:
| Q |
1 |
cccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15253654 |
cccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttat |
15253555 |
T |
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| Q |
101 |
ccattgattctattatgtccttcatttctttcctattatgttcccaacaaaaatttgttcttcaatttttgttttcattattgtaggggaggcgtggcct |
200 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
15253554 |
ccattgtttctattatatccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggagtggcct |
15253455 |
T |
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| Q |
201 |
agatagtgagatagggaaccaaggaca |
227 |
Q |
| |
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|||||||||||||||||||| ||||| |
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| T |
15253454 |
ggatagtgagatagggaaccagggaca |
15253428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45621942 - 45622168
Alignment:
| Q |
1 |
cccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttat |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |
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| T |
45621942 |
cccaccaatagcggtttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaactctttagcgaatttatatttat |
45622041 |
T |
|
| Q |
101 |
ccattgattctattatgtccttcatttctttcctattatgttcccaacaaaaatttgttcttcaatttttgttttcattattgtaggggaggcgtggcct |
200 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45622042 |
ccattgtttctattatatccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggcgtggcct |
45622141 |
T |
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| Q |
201 |
agatagtgagatagggaaccaaggaca |
227 |
Q |
| |
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||||||||||||||||||||| ||||| |
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| T |
45622142 |
agatagtgagatagggaaccagggaca |
45622168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 20188270 - 20188496
Alignment:
| Q |
1 |
cccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttat |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20188270 |
cccaccaatagcggtttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcactgcaataaacaattctttagtgattttatatttat |
20188369 |
T |
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| Q |
101 |
ccattgattctattatgtccttcatttctttcctattatgttcccaacaaaaatttgttcttcaatttttgttttcattattgtaggggaggcgtggcct |
200 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
20188370 |
gcattgtttctattatatccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggagtggcct |
20188469 |
T |
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| Q |
201 |
agatagtgagatagggaaccaaggaca |
227 |
Q |
| |
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||||||||||||||||||||| ||||| |
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| T |
20188470 |
agatagtgagatagggaaccagggaca |
20188496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 51091612 - 51091788
Alignment:
| Q |
32 |
ggtgcatgcatttttcttttgatt----tcagtttcagtgcaataaacaattctttagtgattttatatttatccattgattctattatgtccttcattt |
127 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||| ||||| |
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| T |
51091612 |
ggtgcatgcatttttcttttaattaatttcagtttcagtgcaataaacaattctttagtgattttatattcatcaattgtttctattatatcctacattt |
51091711 |
T |
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| Q |
128 |
ctttcctattat-gttcccaacaaaaatttgttcttcaatttttgttttcattattgtaggggaggcgtggcctaga |
203 |
Q |
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|||||||||||| || |||| | ||| |||||||| ||||| ||||||||||| ||||||| ||| |||||| |
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| T |
51091712 |
ctttcctattatatttatcaaccatttttttttcttcaaattttgccttcattattgtgggggaggagtgacctaga |
51091788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22603463 - 22603688
Alignment:
| Q |
1 |
cccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtgattttatatttat |
100 |
Q |
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|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22603463 |
cccaccaatagcggtttcctgagtgttccatggtgcatgcatttttcttttgatttttgtttcagtgcaataaacaattctttagtgattttatatttat |
22603562 |
T |
|
| Q |
101 |
ccattgattctattatgtccttcatttctttcctattatgttcccaacaaaaatttgttcttcaatttttgttttcattattgtaggggaggcgtggcct |
200 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
22603563 |
ccattgtttctattatatccttcatttctttcctattatgttctcaacaaaaatttgttcttcaa-ttttgccttcattattgtaggggaggcgtggcct |
22603661 |
T |
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| Q |
201 |
agatagtgagatagggaaccaaggaca |
227 |
Q |
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||||||||||||||||||||| ||||| |
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|
| T |
22603662 |
agatagtgagatagggaaccagggaca |
22603688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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