View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17927_low_3 (Length: 649)
Name: NF17927_low_3
Description: NF17927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17927_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 15 - 632
Target Start/End: Complemental strand, 37890831 - 37890215
Alignment:
| Q |
15 |
cacagataagacatttcattgtcattgaaaatgacctaaaaccaacatttcaacaaggcaaaaatctccaaaggcatgcatgacagaatcgataatagtc |
114 |
Q |
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| T |
37890831 |
cacagataagacatttcattgtcattgaaaatgacctaaaaccaacatttcaacaaggcaaaaatctccaaaggcatgcatgacagaatcgataatagtc |
37890732 |
T |
|
| Q |
115 |
ttaacctttgtcagagtggtaccctatgtggttttgcaaccctcatcagagacgaagagaggctattgtaagagaataatctccatcccattggaagaac |
214 |
Q |
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| T |
37890731 |
ttaacctttgtgagagtggtaccctatgtggttttgcaaccctcatcagagacgaagagaggctattgtaagagaataatctccatcccattggaagaac |
37890632 |
T |
|
| Q |
215 |
aagattatctgccactaaccgttttcccttagctctcaaccttttgcaacccctgaagagtaaccaatacaaacaatttttaagnnnnnnnnntcctagg |
314 |
Q |
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| T |
37890631 |
aagattatctgccactaaccgttttcccttagctctcaaccttttacaacccctgaagagtaaccaatacaaacaatttttaagaaaaaaaaatcctagg |
37890532 |
T |
|
| Q |
315 |
agatccctggtgcattgtttcaatatcaaattaaaatagttagtgccatctatctgaggtatgtttggatcaaaggagaaacatgaaannnnnnnnnnnn |
414 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37890531 |
agatccctggtgcaatgtttcaatatcaaattaaaatagttagtgccatctatctgaggtatgtttggatcaaaggagaaacatgaaattttttattttt |
37890432 |
T |
|
| Q |
415 |
gacagcagtaatttttatttaaacattccattacaacattgagtcggtaaccttttgtcaacttagtataaccaatcacttcacttttgtcattttattt |
514 |
Q |
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| T |
37890431 |
gacagcagtaatttttatttaaacattccattacaacattgagtcggtaaccttttgtcaacttagtataaccaatcacttcacttttgtcattttattt |
37890332 |
T |
|
| Q |
515 |
ataccttgaggttcatatgcgatgtataacttcgtataactaataatatttttgctatgtcaaatgtttttactaaaagtatcctatattttaacgatca |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37890331 |
ataccttgaggttcatatgcgatgtataacttcgtataactaataatatttttgctatgtcaaatgtttttactaaaagtatcctata-tttaacgatca |
37890233 |
T |
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| Q |
615 |
tcatctatatatcttact |
632 |
Q |
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| T |
37890232 |
tcatctatatatcttact |
37890215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 50 - 402
Target Start/End: Complemental strand, 37185916 - 37185568
Alignment:
| Q |
50 |
ctaaaaccaacatttcaacaaggcaaaaatctccaaa--ggcatgcatgacagaatcgataatagtcttaacctttgtcagagtggtaccctatgtggtt |
147 |
Q |
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|||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||| ||||||| ||||||||||||| ||||||||| || |||||||| |
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| T |
37185916 |
ctaaaaccaacatttcaacaagacaaaaatgtccaaacaggcatccatgacagaattgataataatcttaacctttgtgagagtggtagccaatgtggtt |
37185817 |
T |
|
| Q |
148 |
ttgcaaccctcatcagagacgaagagaggctattgtaagagaataatctccatcccattggaagaacaagattatctgccactaaccgttttcccttagc |
247 |
Q |
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| T |
37185816 |
ttggaaccctcatcagagacgaaaaaaggctattgtaagagaatgatctccatccca-tagaagaacaagatgatctgacgctaaccaatttttcttaac |
37185718 |
T |
|
| Q |
248 |
tctcaaccttttgcaacccctgaagagtaaccaatacaaacaatttttaagnnnnnnnnntcctaggagatccctggtgcattgtttcaatatcaaatta |
347 |
Q |
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| T |
37185717 |
cgtcaatcttaagctacccctgaagagtaatcaatacaaacaaattaaaa-----ataaatcccaggaaatccatggtacaatgtttcattatcaaatta |
37185623 |
T |
|
| Q |
348 |
aaatagttagtgccatctatctgaggtatgtttggatcaaaggagaaacatgaaa |
402 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||| || |||||| |
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| T |
37185622 |
aaatagtaagtgccatcaatctgaggtatgtttggatcaaaggaggaatatgaaa |
37185568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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