View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17927_low_5 (Length: 482)
Name: NF17927_low_5
Description: NF17927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17927_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 25492674 - 25493127
Alignment:
| Q |
1 |
caaggggaaagaaactgatctctttaatcttggccttattccttaaagtccatgatgaagnnnnnnnnnnncaatatataattctccaatccctgagagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||| |
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| T |
25492674 |
caaggggaaagaaactgatctctttaatcttggccttattacttaaagtccatgatgaagaaataaaaaaacacaatataattctcctatccctgagagg |
25492773 |
T |
|
| Q |
101 |
taattatcttcttaaacatgatatgacaatattaattgaaaattatttaccaataccatcgttaattactgaccaacaacatggttaattaacgatgtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25492774 |
taattatcttcttaaacatgatatgacaatattaattgaaaattatttactaataccatcgttaattactgactaacaacatggttaattaacgatgtat |
25492873 |
T |
|
| Q |
201 |
cactagcacattatcggtaagatgcatctaacttggttaaccattttcaattaatatgttgcaacatttttcttgtataattaattgtttcaatttggtc |
300 |
Q |
| |
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|||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| | |
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| T |
25492874 |
cactggcacattatcggtaagctgcatctaacttagttaaccatggccaattaatatgttgcaacatgtttcttgtataattaattgtttcagtttggcc |
25492973 |
T |
|
| Q |
301 |
tctccctgtacttacaatacaacaaaaatgagatttagtaacatttgaaaaatattattgttactaaaggtcctaaatgttgtagtattatgaattgaaa |
400 |
Q |
| |
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||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25492974 |
tctccatgtacttacactacaataaaaatgagatttagtaacatttgaaaaatattattgttactaaaggtcctaaatgttgtagcattatgaattgaaa |
25493073 |
T |
|
| Q |
401 |
attgcattgcatatttgctaactt--gctcatctgcattttcatatggatctaa |
452 |
Q |
| |
|
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|
| T |
25493074 |
attgcattgcatatttgctaacttgcgctcatctgcattttcatatgcatctaa |
25493127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 76 - 314
Target Start/End: Original strand, 25501129 - 25501366
Alignment:
| Q |
76 |
atataattctccaatccctgagaggtaattatcttcttaaacatgatatgacaatattaattgaaaattatttaccaataccatcgttaattactgacca |
175 |
Q |
| |
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|||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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|
| T |
25501129 |
atataattctcctagccctgag--gtaattatcttcttaaacatgatatgacaatattatatgaaaattatttaccaataccatcgttaattactgacta |
25501226 |
T |
|
| Q |
176 |
acaacatggttaattaacgatgtatcactagcacattatcggtaagatgcatctaac-ttggttaaccattttcaattaatatgttgcaacatttttctt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || ||||||||| | | |||||||||||| |||| |||||| |
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| T |
25501227 |
acaacatggttaattaacgatgtatcactgatccattattggtattatgcatctaactttagttaaccatgtccgattaatatgttgggacatgtttctt |
25501326 |
T |
|
| Q |
275 |
gtataattaattgtttcaatttggtctctccctgtactta |
314 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
25501327 |
gtataattaactgtttcaatttggcctctccctgtactta |
25501366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25501053 - 25501105
Alignment:
| Q |
1 |
caaggggaaagaaactgatctctttaatcttggccttattccttaaagtccat |
53 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| || |||||||||||| |
|
|
| T |
25501053 |
caaggggaaagtaactaatctctttaatcttggcctttttacttaaagtccat |
25501105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25642473 - 25642509
Alignment:
| Q |
1 |
caaggggaaagaaactgatctctttaatcttggcctt |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
25642473 |
caaggggaaagaaactgatctctttaatcttggcctt |
25642509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 25450102 - 25450155
Alignment:
| Q |
99 |
ggtaattatcttcttaaacatgatatg--acaatattaattgaaaattatttac |
150 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
25450102 |
ggtaattatgttcttaaacatgatatgccacaatattaattgaaaactatttac |
25450155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25450019 - 25450055
Alignment:
| Q |
1 |
caaggggaaagaaactgatctctttaatcttggcctt |
37 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
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|
| T |
25450019 |
caaggggaaggaaactgatctctttaatcttggcctt |
25450055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 25429355 - 25429385
Alignment:
| Q |
98 |
aggtaattatcttcttaaacatgatatgaca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
25429355 |
aggtaattatcttcttaaacatgatatgaca |
25429385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25473880 - 25473844
Alignment:
| Q |
1 |
caaggggaaagaaactgatctctttaatcttggcctt |
37 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
25473880 |
caagggaaaagaaaccgatctctttaatcttggcctt |
25473844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 26173784 - 26173823
Alignment:
| Q |
318 |
tacaacaaaaatgagatttagtaacatttgaaaaatatta |
357 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||| |
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|
| T |
26173784 |
tacaacaaaaatgagatttagtaacacttaaaaaatatta |
26173823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 9438823 - 9438791
Alignment:
| Q |
321 |
aacaaaaatgagatttagtaacatttgaaaaat |
353 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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|
| T |
9438823 |
aacaaaaatgagatttagtaacacttgaaaaat |
9438791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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