View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17928_low_1 (Length: 381)
Name: NF17928_low_1
Description: NF17928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17928_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 54878878 - 54879249
Alignment:
| Q |
1 |
atgatacacaaaatttgagtcctcaatcccagcctcacatgcttttaaaattaattttggtaagaccctccnnnnnnnnnnnnnaaaacggtatgcaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
54878878 |
atgatacacaaaatttgagtcctcaatcccagcctcacatgcttttaaaattaattttggtaagaccctccatatatatata--aaaacagtatgcaatc |
54878975 |
T |
|
| Q |
101 |
catgtgaggaagaatatatattggaactataataagattta----------gatgaaaagtgcaatgttcttttcttatcttctagtctctaccattttg |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54878976 |
catgtgaggaagaatatatattggaactataataagatttaaatacacaatgatgaaaagtgcaatgttcttttcttatcttctagtctctaccattttg |
54879075 |
T |
|
| Q |
191 |
atatgccgacaacttgcatatcttatacaatattttgttcaaagatttaaaaacgagatcatcatcattatcatcatccatatatatcgatctagtcccc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
54879076 |
atatgccgacaacttgcatatcttatacaatattttgttcaaagatttaaaaacgagatcatcatc---atcatcatccatatatatcgatctagtcccc |
54879172 |
T |
|
| Q |
291 |
-nnnnnnngtgttgtttgtcgtctagttaagccgacttcttaatttaatcacttttccattcttgcactttccaatt |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54879173 |
aaaaaaaagtgttgtttgtcgtctagttaagccgacttcttaatttaatcacttttccattcttgcactttccaatt |
54879249 |
T |
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