View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17929_high_3 (Length: 376)
Name: NF17929_high_3
Description: NF17929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17929_high_3 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 13488173 - 13487813
Alignment:
| Q |
16 |
caaataaattcacaaagttaggcattctgtaaataaaaacaaaaaccatttatgcatgtaatcgttacttccatggaaataaaggacaatgagacaacct |
115 |
Q |
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| T |
13488173 |
caaataaattcacaaagttaggcattctgtaaataaaaacaaaaaccatttatgcgtgtaatcgttacttccatggaaataaaggacaatgagacaacct |
13488074 |
T |
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| Q |
116 |
tatgatcaaactcagccatcttcaaaacaataggcacaattattggtttggggcctgacttctccttactaacaattattttgtccaacgccggttccgc |
215 |
Q |
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| T |
13488073 |
tatgatcaaattcagccatcttcaaaacaataggcacgattattggtttggggcctgacttctccttaccaacaattattttgtccaacgccggttccgc |
13487974 |
T |
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| Q |
216 |
aaaagaaacatctgcatcaaaacattaaattgaaaccagtgctatcaatagtagaacgctaaaaatccgcaatgtgaaatagcaaatagagttgcgaaaa |
315 |
Q |
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| T |
13487973 |
aaaagaaacatctgcatcaaaacattaaattgaaaccagtgctatcaatagtagaacactaaaaatccgcaatgtgaaatagcaaatagagttgcgaaaa |
13487874 |
T |
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| Q |
316 |
aatagcggaagccacattagcacttgagttaattatatatgtaaagaggcacactgcataa |
376 |
Q |
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| T |
13487873 |
aatagcggaagccacattagcacttgagttaattatatatgtaaagaggcacactgcataa |
13487813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 42 - 376
Target Start/End: Complemental strand, 24810253 - 24809902
Alignment:
| Q |
42 |
ctgtaaataaaaacaaaaaccatttatgcatgtaatcgttacttccatggaaataaaggacaatgagacaaccttatgatcaaactcagccatcttcaaa |
141 |
Q |
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| T |
24810253 |
ctgtaaataaaaacaaaaaccatttatgcgtgtaatcgttacttccatggaaataatggacaatgagacaaccttatgatcgaattcagccatcttcaaa |
24810154 |
T |
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| Q |
142 |
acaataggcacaattattggtttggggcctgacttctccttactaacaattattttgtccaacgccggttccgcaaaagaaacatct------------- |
228 |
Q |
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| T |
24810153 |
acaataggcacgattattggtttggggcctgacttctccttactaacaattattttgtccaacgccagttccgcaagagaaacatcttcatgacaaacta |
24810054 |
T |
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| Q |
229 |
-----gcatcaaaacattaaattgaaaccagtgctatcaatagtagaacgctaaaaatccgcaatgtgaaatagcaaatagagttgcgaaaaaatagcgg |
323 |
Q |
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| T |
24810053 |
atttgacatcaaaacattaaattgaaaccagtgttat-aatagtagaacgctaaatatccacgatgtgaaattgcaaatagagttgcgaaaaaatagcgg |
24809955 |
T |
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| Q |
324 |
aagccacattagcacttgagttaattatatatgtaaagaggcacactgcataa |
376 |
Q |
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| T |
24809954 |
aagccacattagcacttgagttaattatatatgtaaagaggcacgctgcataa |
24809902 |
T |
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