View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17929_high_5 (Length: 348)
Name: NF17929_high_5
Description: NF17929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17929_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 6512472 - 6512800
Alignment:
| Q |
5 |
tttttctaaaaaagtaactaaccttaattcttcatgcaaatgattactaatgaattaggagctgccaccgccgccaaaaccaccgtcattgccatcaaca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6512472 |
tttttctaaaaaagtaactaaccttaattcttcatgcaaatgattactaatgaattaggagctgccaccgccgccaaaaccaccgtcattgccatcaaca |
6512571 |
T |
|
| Q |
105 |
ccggtcggaatagccagtgcgcggtgaaatgggtggtggaccaccttctaaagaagaactctaattgcattctcattcatgttcgtactaaacccctcaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
6512572 |
ccggtcggaatagccagtgcgcggtgaaatgggcggtggaccaccttctaaagaagaactccaattgcattctcattcatgttcgtaccaaacctctcaa |
6512671 |
T |
|
| Q |
205 |
ttccagtaggtattcttctccttatctcccattcatccttcccacatcaacnnnnnnnnnnnntgaacctttcatcataaattttaacaaaaccctgttt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6512672 |
ttccagtaggtattcttctccttatctcccattcatccttctcacatcaacaaaaaaaataaatcaacctttcatcataaattttaacaaaaccctgttt |
6512771 |
T |
|
| Q |
305 |
ttgtcctttcacctagattatcatatttt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6512772 |
ttgtcctttcacctagattatcatatttt |
6512800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University