View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17929_high_8 (Length: 293)
Name: NF17929_high_8
Description: NF17929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17929_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 48 - 275
Target Start/End: Original strand, 26757895 - 26758142
Alignment:
| Q |
48 |
gattacgtagtatacgaatttcatgatgacttcagtgagggtccagattgattaaaaataaacataagaacatgatgttcagttaaacctattttagatg |
147 |
Q |
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| T |
26757895 |
gattacgtagtataagaatttcatgatgacttcagtgagggtccagattgattaaaaataaacataagaacatgatgttcagttaaacctattttagatg |
26757994 |
T |
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| Q |
148 |
aaaatatccttaatttctt-------------------ttgtgtgttctattcactctgctggagataggtaattgaatttgcatgttaatataaataaa |
228 |
Q |
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| T |
26757995 |
aaaatatccttaatttcttttaaaattttcaactacaattgtgtgttctattcactctgctggagataggtaattgaatttgcatgttaatataaataaa |
26758094 |
T |
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| Q |
229 |
caca-ttgtctatagaactctttaacacaatctctcgagccagatttt |
275 |
Q |
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| T |
26758095 |
cacatttgtctataggactctttaacacaatctctcgagcctgatttt |
26758142 |
T |
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Back To:
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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 15790551 - 15790483
Alignment:
| Q |
55 |
tagtatacgaatttcatgatgacttcagtgagggtccagattgattaaaaataaacataagaacatgat |
123 |
Q |
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| T |
15790551 |
tagtataataatttcatgatgacttcggtgagggtccagattgatgaaaaataaacataagaacatgat |
15790483 |
T |
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