View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17929_low_1 (Length: 481)
Name: NF17929_low_1
Description: NF17929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17929_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 11 - 465
Target Start/End: Original strand, 52233456 - 52233910
Alignment:
| Q |
11 |
caaagggttgccatttaattttggtgttaccaaattcttctcagtaaattgtgcaattgaggatgggtcaaaattttcaaaaagcttcctataataacag |
110 |
Q |
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| T |
52233456 |
caaagggttgccatttaattttggtgttaccaaattcttctcagtaaattgtgcaattgaggatgggtcaaaattttcaaaaagcttcctataataacag |
52233555 |
T |
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| Q |
111 |
ataacaaaaaataagaatcaaatagcatgaaaatggaattaagcattaatggtttgaaaaaattgagacctagagatagagacaaggagacatgcctgaa |
210 |
Q |
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| T |
52233556 |
ataacaaaaaataagaatcaaatagcatgaaaatggaattaagcattaatggtttgaaaaaattgagacctagagatagagacatggagacatgcctgaa |
52233655 |
T |
|
| Q |
211 |
tatgtctctgtggttaaggattgttggccaagtgtgttctgctaatgcctgtgaaaatactagaagctcaaatagctttctatcatcatcaagaactgga |
310 |
Q |
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| T |
52233656 |
tatgtctctgtggttaaggattgttggccaagtgtgttctgctaatgcctgtgaaaatactagaagctcaaatagctttctatcatcatcaagaactgga |
52233755 |
T |
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| Q |
311 |
acaccccattcatcgtcatggaaagcagtataaagagggtctgttaagaaaataacatttctcgattattagtggaggtaatgcacactgtaggagtaaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52233756 |
acaccccattcatcgtcatggaaagcagtataaagagggtctgttaagaaaataacatttctcaattattagtggaggtaatgcacactgtaggagtaaa |
52233855 |
T |
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| Q |
411 |
atctaagcgacatcatccttggccgaaaatgaagttcacaatcccataaacaaaa |
465 |
Q |
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| T |
52233856 |
atctaagcgacatcatccttggccgaaaatgaagttcacaatcccataaacaaaa |
52233910 |
T |
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