View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17929_low_10 (Length: 258)
Name: NF17929_low_10
Description: NF17929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17929_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 34348796 - 34349044
Alignment:
| Q |
1 |
aaaagcacgttgtttctatattcacagacattcaattcttatataagatttgatattgagaacgtggggtgaaaaacatatatatggacaaatatttaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34348796 |
aaaagcacgttgtttctatattcacagacattcaattcttatataagatttgatattgagaacgtggggtgaaaaacatatatatggacaaatatttaat |
34348895 |
T |
|
| Q |
101 |
ctcattaatttaccatacagacagcactatgattaaatatgaattgcattgtgaccgttgtgctggtcaataaacgagttcttactttatttcaaagatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34348896 |
ctcattaatttaccatacagacagcactatgattaaatatgaattgcattgtgaccgctgtgctggtcaataaacgagttcttactttatttcaaagatt |
34348995 |
T |
|
| Q |
201 |
attattgcatatgatacagtttggtggctttgagacttcattgtcattc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34348996 |
attattgcatatgatacagtttggtggctttgagacttcattgtcattc |
34349044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University