View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17929_low_2 (Length: 397)
Name: NF17929_low_2
Description: NF17929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17929_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 13689521 - 13689895
Alignment:
| Q |
8 |
ccaagaatattctaatacacttacaccaacacttaaataaaaaccagttttaattaattagcattttaaagagagctatatgactgagatttgggccacg |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13689521 |
ccaaaaatattctaatacacttacaccaacacttaaataaaaaccagttttaattaattagcattttaaagagagctatatgactgagatttgggccacg |
13689620 |
T |
|
| Q |
108 |
acacaacagtttttgatgttgttcaaacagnnnnnnnnnnnnnn-tcaattgagactgcattcgactatgattctcattaatatcaaggatcgaggcacg |
206 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13689621 |
acacaacagtttttgatgttgttcaaatagaaaaagaaaaaaaaatcaattgagactgcattcgactatgattctccttaatatcaaggatcgaggcacg |
13689720 |
T |
|
| Q |
207 |
aacccaccatcgttactgtgactgttatttgaaagctaatgatgtcatgatgaagacaaagataaagaatcctacctctccaagacttcataatattttt |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13689721 |
aagccaccatcgttactgtgactgttatttgaaagctaatgatgtcatgatgaagacaaagataaagaatcctacctctccaagacttcataatattttt |
13689820 |
T |
|
| Q |
307 |
gcttcctaatctcaaagagcattttcatgcagccttcattttcattagtatttgtaaaaccattgaggtacttct |
381 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13689821 |
gcttcctaatctcaaagagcattttcatggagccttcattttcattagtatttgtaaaaccattgaggtacttct |
13689895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 13634844 - 13634901
Alignment:
| Q |
278 |
ctacctctccaagacttcataatatttttgcttcctaatctcaaagagcattttcatg |
335 |
Q |
| |
|
|||||| |||||| ||||| ||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
13634844 |
ctacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcatg |
13634901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University