View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17929_low_4 (Length: 368)

Name: NF17929_low_4
Description: NF17929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17929_low_4
NF17929_low_4
[»] chr3 (5 HSPs)
chr3 (142-239)||(3544971-3545068)
chr3 (142-239)||(3548733-3548830)
chr3 (142-192)||(3545381-3545431)
chr3 (142-192)||(3549143-3549193)
chr3 (18-53)||(3548919-3548954)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 3545068 - 3544971
Alignment:
Q  142 ttctcatgctcattctcctcaccataaatcacattctccctcccctcaccaccatcactcacaatcacccactccctcccgtcaccataaatctcatg 239  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3545068 ttctcatgctcattctcctcaccataaatcacattctccttcccctcaccaccatcactcaccatcacccactccctcccgtcaccataaatctcatg 3544971  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 3548830 - 3548733
Alignment:
Q  142 ttctcatgctcattctcctcaccataaatcacattctccctcccctcaccaccatcactcacaatcacccactccctcccgtcaccataaatctcatg 239  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3548830 ttctcatgctcattctcctcaccataaatcacattctccttcccctcaccaccatcactcaccatcacccactccctcccgtcaccataaatctcatg 3548733  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 3545431 - 3545381
Alignment:
Q  142 ttctcatgctcattctcctcaccataaatcacattctccctcccctcacca 192  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  3545431 ttctcatgctcattctcctcaccatcaatcacattctccctccccacacca 3545381  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 3549193 - 3549143
Alignment:
Q  142 ttctcatgctcattctcctcaccataaatcacattctccctcccctcacca 192  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  3549193 ttctcatgctcattctcctcaccatcaatcacattctccctccccacacca 3549143  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 3548954 - 3548919
Alignment:
Q  18 aatcacatgctccctcccctcaccatcaatctcatg 53  Q
    |||| |||||||||||||||||||||||||||||||    
T  3548954 aatcgcatgctccctcccctcaccatcaatctcatg 3548919  T

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