View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17929_low_7 (Length: 325)
Name: NF17929_low_7
Description: NF17929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17929_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 27639071 - 27638771
Alignment:
| Q |
10 |
aagaatatatatttactcaaaactcatcctctatattcaactgcctacaagagtttgaacttttactgaatcaggtgtttttcttggttgttttttctgc |
109 |
Q |
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| T |
27639071 |
aagaatatatatttactcaaaactcatcctctatattcaactgcctacaagagtttgaacttttaccgattcaggtgtttttcttggttgttttttctgc |
27638972 |
T |
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| Q |
110 |
ataacttggagttggcccaaggtaattttctgaataatttggagcgagtgtgaag-gnnnnnnngcatagtttgtagcaggtttccagcttgtcagctgc |
208 |
Q |
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| T |
27638971 |
ataacttggagctggcccaaggtaatttactgaataatttggagcgagtgtgaagcctttttttgcatagtttgtagcaggtttccagcttgtcagctgc |
27638872 |
T |
|
| Q |
209 |
tgttgtgcnnnnnnngtgttttgatacaacagctgtaatgtagcggcgtttctataaaggtgttctagaaagcatgatgcatagtgaaagacacatgttt |
308 |
Q |
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|||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27638871 |
tgttgtgcaaaaaaagtgttttgatactacagctgcaatgtagcggcgtttctataaaggtgttctagaaagcatgatgcatagtgaaagacacatgttt |
27638772 |
T |
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| Q |
309 |
t |
309 |
Q |
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| T |
27638771 |
t |
27638771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 26842126 - 26842336
Alignment:
| Q |
10 |
aagaatatatatttactcaaaactcatcctctatattcaactgcctacaagagtttgaacttttactgaatcaggtgtttttcttggttg----tttttt |
105 |
Q |
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| T |
26842126 |
aagaatatatattcactcaaaactcatcctctatattgagttgcctataggagtttgaacttttactgaatcaggtgtttttcttggttgtttttttttt |
26842225 |
T |
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| Q |
106 |
ctgcataacttggagttggcccaaggtaattttctgaataatttggagcgagtgtgaaggnnnnnnngcatagtttgtagcaggtttccagcttgtcagc |
205 |
Q |
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|||||||||||||| ||| |||||||||||||||| |||||||||||||||| | | || || ||||||| |||||||||| || |||| || |
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| T |
26842226 |
ttgcataacttggagctggtccaaggtaattttctgcataatttggagcgagttttagggattttatgcttagtttggagcaggtttcaggcctgtcggc |
26842325 |
T |
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| Q |
206 |
tgctgttgtgc |
216 |
Q |
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||||||||||| |
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| T |
26842326 |
tgctgttgtgc |
26842336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 49926258 - 49926179
Alignment:
| Q |
41 |
tatattcaactgcctacaagagtttgaacttttactgaatcaggtgtttttcttggttgttttttctgcataacttggag |
120 |
Q |
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|||||| | ||||||| | ||||| |||| || |||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
49926258 |
tatattgagctgcctataggagttcgaacattgactgaatcaggtgtttttcttggtagttttttctgcataatttggag |
49926179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 49926093 - 49926029
Alignment:
| Q |
245 |
aatgtagcggcgtttctataaaggtgttctagaaagcatgatgcatagtgaaagacacatgtttt |
309 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||| | ||||||||| |||| |||| |
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| T |
49926093 |
aatgtagcagcgtttctataagcgtgttctagaaagcatgatgtaaagtgaaagatacatatttt |
49926029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 32149921 - 32150049
Alignment:
| Q |
24 |
actcaaaactcatcctctatattcaactgcctacaagagtttgaacttttactgaatcaggtgtttttcttggttgttttttctgcataacttggagttg |
123 |
Q |
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|||| |||||||||||||||||| | || ||||| |||||| |||||||||||||| | |||||||||| ||| ||| || ||||||| |||||| || |
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| T |
32149921 |
actctaaactcatcctctatattgagctttctacaggagtttccacttttactgaatctgatgtttttctttgtt-tttcttttgcataatttggagctg |
32150019 |
T |
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| Q |
124 |
gcccaaggtaattttctgaataatttggag |
153 |
Q |
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| ||| ||||| ||||| ||||||||||| |
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| T |
32150020 |
gttcaatgtaatgttctgcataatttggag |
32150049 |
T |
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