View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1792_low_1 (Length: 334)

Name: NF1792_low_1
Description: NF1792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1792_low_1
NF1792_low_1
[»] chr4 (1 HSPs)
chr4 (16-321)||(42308972-42309279)
[»] chr8 (3 HSPs)
chr8 (197-252)||(29520489-29520544)
chr8 (83-134)||(10080275-10080326)
chr8 (196-251)||(30453893-30453948)
[»] chr5 (2 HSPs)
chr5 (197-234)||(2078582-2078619)
chr5 (199-252)||(39668825-39668878)
[»] chr3 (3 HSPs)
chr3 (197-234)||(31566303-31566340)
chr3 (197-234)||(51450808-51450845)
chr3 (197-234)||(52136331-52136368)
[»] chr2 (4 HSPs)
chr2 (197-234)||(1648024-1648061)
chr2 (197-234)||(16290759-16290796)
chr2 (83-120)||(19855416-19855453)
chr2 (197-234)||(37520607-37520644)
[»] chr1 (2 HSPs)
chr1 (197-234)||(6985655-6985692)
chr1 (197-234)||(52920995-52921032)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 42308972 - 42309279
Alignment:
Q  16 atcccaactctctataatgtttcatttttaatcctttcaaacaaaacatctttagcttttctaagcctaatttattttcgtgttggttcttgagatccca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42308972 atcccaactctctataatgtttcatttttaatcctttcaaacaaaacatctttagcttttctaagcctaatttattttcgtgttggttcttgagatccca 42309071  T
Q  116 acactct--tccatacaacatcactagttacagctattggatattagattcatgttagggattcgaataagtttacgtttgatgcctaacacaaccctat 213  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42309072 acactctgttccatacaacatcactagttacagctattggatattagattcatgttagggattcgaataagtttacgtttgaggcctaacacaaccctat 42309171  T
Q  214 ccttttatccgggcttgggactagctatgtgtagcaaggtttagaacacatattctaacctcaaactaaaaataagtatatatcaaccagattcagaaca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42309172 ccttttatccgggcttgggactagctatgtgtagcaaggtttagaacacatattctaacctcaaactaaaaataagtatatatcaaccagattcagaaca 42309271  T
Q  314 ttagagta 321  Q
    ||||||||    
T  42309272 ttagagta 42309279  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 29520544 - 29520489
Alignment:
Q  197 gcctaacacaaccctatccttttatccgggcttgggactagctatgtgtagcaagg 252  Q
    ||||||||||||||| |||||||| ||||||||||||| |||||||| ||||||||    
T  29520544 gcctaacacaaccctctccttttacccgggcttgggaccagctatgtatagcaagg 29520489  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 10080275 - 10080326
Alignment:
Q  83 taatttattttcgtgttggttcttgagatcccaacactcttccatacaacat 134  Q
    |||||||||||||||  ||||||||| | ||||||||||| |||||||||||    
T  10080275 taatttattttcgtgccggttcttgacaacccaacactctcccatacaacat 10080326  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 30453893 - 30453948
Alignment:
Q  196 tgcctaacacaaccctatccttttatccgggcttgggactagctatgtgtagcaag 251  Q
    |||||||||||||||| || |||||||||||||||||||  ||||||  |||||||    
T  30453893 tgcctaacacaaccctctctttttatccgggcttgggaccggctatgcatagcaag 30453948  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 2078582 - 2078619
Alignment:
Q  197 gcctaacacaaccctatccttttatccgggcttgggac 234  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  2078582 gcctaacacaaccctctccttttatccgggcttgggac 2078619  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 39668825 - 39668878
Alignment:
Q  199 ctaacacaaccctatccttttatccgggcttgggactagctatgtgtagcaagg 252  Q
    |||||||||||||  ||||||| |||||||||||||  ||||||| ||||||||    
T  39668825 ctaacacaaccctcaccttttacccgggcttgggaccggctatgtatagcaagg 39668878  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 31566303 - 31566340
Alignment:
Q  197 gcctaacacaaccctatccttttatccgggcttgggac 234  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  31566303 gcctaacacaaccctctccttttacccgggcttgggac 31566340  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 51450808 - 51450845
Alignment:
Q  197 gcctaacacaaccctatccttttatccgggcttgggac 234  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  51450808 gcctaacacaaccctctccttttacccgggcttgggac 51450845  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 52136368 - 52136331
Alignment:
Q  197 gcctaacacaaccctatccttttatccgggcttgggac 234  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  52136368 gcctaacacaaccctctccttttacccgggcttgggac 52136331  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 1648061 - 1648024
Alignment:
Q  197 gcctaacacaaccctatccttttatccgggcttgggac 234  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  1648061 gcctaacacaaccctctccttttacccgggcttgggac 1648024  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 16290796 - 16290759
Alignment:
Q  197 gcctaacacaaccctatccttttatccgggcttgggac 234  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  16290796 gcctaacacaaccctttccttttacccgggcttgggac 16290759  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 19855453 - 19855416
Alignment:
Q  83 taatttattttcgtgttggttcttgagatcccaacact 120  Q
    |||||||||||||||||||||||||| | |||||||||    
T  19855453 taatttattttcgtgttggttcttgacagcccaacact 19855416  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 37520644 - 37520607
Alignment:
Q  197 gcctaacacaaccctatccttttatccgggcttgggac 234  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  37520644 gcctaacacaaccctctccttttacccgggcttgggac 37520607  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 6985655 - 6985692
Alignment:
Q  197 gcctaacacaaccctatccttttatccgggcttgggac 234  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  6985655 gcctaacacaaccctctcctttcatccgggcttgggac 6985692  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 52921032 - 52920995
Alignment:
Q  197 gcctaacacaaccctatccttttatccgggcttgggac 234  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  52921032 gcctaacacaaccctctccttttacccgggcttgggac 52920995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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