View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1792_low_3 (Length: 301)
Name: NF1792_low_3
Description: NF1792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1792_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 36769912 - 36770164
Alignment:
| Q |
8 |
attatacttctgagggtaaaaagggaaaaatatcagctaacatatgccacttctattctacaatgtctctctggaagataaagaaagatacacactacaa |
107 |
Q |
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| T |
36769912 |
attatacttctgagggtaaaaagggaaaaatatcagctaacatattccacttttatactacaatgtctctctggaagataaagaaagatacacactacaa |
36770011 |
T |
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| Q |
108 |
cctcatgctcggcttgaactagagagagacagaaaaccaaagaggctaaggtgaagttttttgaaatcatcatcttctccctcaagtttggttaatcttg |
207 |
Q |
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| T |
36770012 |
cctcatgctcggcttgaactagagagagacagaaaaccaaagaggctaaggtgaagttttttgaaatcatcatcttctccctcaagtttggttagtcttg |
36770111 |
T |
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| Q |
208 |
tcttagatttctagttttgatgggagaacatcttctcaaattagagctatgtg |
260 |
Q |
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| T |
36770112 |
tcttagatttctagttttgatgggagaacatcttctcaaattagagctatgtg |
36770164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 36754277 - 36754358
Alignment:
| Q |
176 |
atcatcttctccctcaagtttggttaatcttgtcttagatttctagttttgatgggagaacatcttctcaaattagagctat |
257 |
Q |
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| T |
36754277 |
atcatcttctctatcaagtttggtgagtcttgtcttagatttttacttttgatgtgagaacatcttctccaattagagctat |
36754358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 36746613 - 36746700
Alignment:
| Q |
173 |
atcatcatcttctccctcaagtttggttaatcttgtcttagatttctagttttgatgggagaacatcttctcaaattagagctatgtg |
260 |
Q |
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| T |
36746613 |
atcatcatcatcttctttaagtttggtgagtcttgtcttagatttctacttttgatgtgagaacatcttctaaaattagaactatgtg |
36746700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 36746874 - 36746948
Alignment:
| Q |
183 |
tctccctcaagtttggttaatcttgtcttagatttctagttttgatgggagaacatcttctcaaattagagctatgtg |
260 |
Q |
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| T |
36746874 |
tctccctcaagtttggtgagtcttgtcttagattttt---ttttatgtgagaacatcttctcaaattagagctatgtg |
36746948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 36765399 - 36765486
Alignment:
| Q |
173 |
atcatcatcttctccctcaagtttggttaatcttgtcttagatttctagttttgatgggagaacatcttctcaaattagagctatgtg |
260 |
Q |
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| T |
36765399 |
atcatcattttatcctttaagtttggtgagtcttgttttagatttctacttttgatgtgagaacatcttctaaaattagaactatgtg |
36765486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 36746538 - 36746605
Alignment:
| Q |
67 |
acaatgtctctctggaagataaagaaagatacacactacaacctcatgctcggcttgaactagagaga |
134 |
Q |
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| T |
36746538 |
acaatgtctctctgcaaaacaaagaaagagacacacaacagcctcatgctccgcttgaactagagaga |
36746605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 36765323 - 36765390
Alignment:
| Q |
67 |
acaatgtctctctggaagataaagaaagatacacactacaacctcatgctcggcttgaactagagaga |
134 |
Q |
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| T |
36765323 |
acaatgtctctctgcaaaacaaagaaagagacacacaacagcctcatgctcagcttgaattagagaga |
36765390 |
T |
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